Gene annotation
Transcriptome id Sobic.001G434900.1
Synonym Sb01g040920, FBR11, ATLCB1, LCB1, EMB2779
Functional annotation serine palmitoyltransferase 1, putative, expressed
UniProt C5WQW4
Pfam PF00155
Panther DB PTHR13693 PTHR13693:SF2
NCBI CDD -
KEGG Orthology K00654; serine palmitoyltransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G36480 : long-chain base1
RAP-DB (Rice) LOC_Os03g14800.4 : serine palmitoyltransferase 1, putative, expressed
MaizeGDB (Corn) Zm00025a047668 , Zm00025a052869 , Zm00025a017299 , Zm00025a010686 , Zm00025a029243 , Zm00025a030937 , Zm00025a012166 , Zm00025a001610
Brachypodium KQK22535 , KQK22537 , KQK22536
Barley HORVU4Hr1G062740.3 , HORVU4Hr1G062740.5 , HORVU4Hr1G062740.4 , HORVU4Hr1G062740.7 , HORVU4Hr1G062740.6 , HORVU4Hr1G062740.1 , HORVU4Hr1G062740.2 , HORVU4Hr1G062740.8
Wheat TraesCS4D02G222600 , TraesCS4B02G222100 , TraesCS4A02G081700
Populus -


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cDNA sequences
Sobic.001G434900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G122700 expressed protein -
2 Sobic.004G350300 No apical meristem protein, putative, expressed -
3 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
4 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
5 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
6 Sobic.005G176000 zinc finger family protein, putative, expressed -
7 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
8 Sobic.001G162100 WRKY94, expressed -
9 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
10 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
11 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
12 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
13 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
14 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
15 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
16 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
17 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
18 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
19 Sobic.010G000900 spotted leaf 11, putative, expressed -
20 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family


Gene co-expression network
sample Sobic001G434900 Sobic001G434900 Sobic002G122700 Sobic002G122700 Sobic001G434900--Sobic002G122700 Sobic004G350300 Sobic004G350300 Sobic001G434900--Sobic004G350300 Sobic003G002400 Sobic003G002400 Sobic001G434900--Sobic003G002400 Sobic003G367300 Sobic003G367300 Sobic001G434900--Sobic003G367300 Sobic006G225600 Sobic006G225600 Sobic001G434900--Sobic006G225600 Sobic005G176000 Sobic005G176000 Sobic001G434900--Sobic005G176000 Sobic003G248600 Sobic003G248600 Sobic001G434900--Sobic003G248600 Sobic001G162100 Sobic001G162100 Sobic001G434900--Sobic001G162100 Sobic004G274400 Sobic004G274400 Sobic001G434900--Sobic004G274400 Sobic004G234900 Sobic004G234900 Sobic002G122700--Sobic004G234900 Sobic002G122700--Sobic006G225600 Sobic002G122700--Sobic001G434900 Sobic010G101500 Sobic010G101500 Sobic002G122700--Sobic010G101500 Sobic001G220400 Sobic001G220400 Sobic002G122700--Sobic001G220400 Sobic001G329100 Sobic001G329100 Sobic002G122700--Sobic001G329100 Sobic010G000900 Sobic010G000900 Sobic002G122700--Sobic010G000900 Sobic010G188100 Sobic010G188100 Sobic002G122700--Sobic010G188100 Sobic002G122700--Sobic003G248600 Sobic004G350300--Sobic003G002400 Sobic004G350300--Sobic001G434900 Sobic004G350300--Sobic003G248600 Sobic004G321900 Sobic004G321900 Sobic004G350300--Sobic004G321900 Sobic004G183400 Sobic004G183400 Sobic004G350300--Sobic004G183400 Sobic001G122500 Sobic001G122500 Sobic004G350300--Sobic001G122500 Sobic002G045300 Sobic002G045300 Sobic004G350300--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic004G350300--Sobic001G433400 Sobic004G350300--Sobic004G274400 Sobic003G002400--Sobic004G350300 Sobic003G002400--Sobic004G274400 Sobic003G002400--Sobic001G434900 Sobic003G002400--Sobic002G045300 Sobic003G220600 Sobic003G220600 Sobic003G002400--Sobic003G220600 Sobic004G271700 Sobic004G271700 Sobic003G002400--Sobic004G271700 Sobic003G002400--Sobic001G122500 Sobic006G033200 Sobic006G033200 Sobic003G002400--Sobic006G033200 Sobic003G002400--Sobic010G101500 Sobic002G293300 Sobic002G293300 Sobic003G367300--Sobic002G293300 Sobic001G516100 Sobic001G516100 Sobic003G367300--Sobic001G516100 Sobic003G367300--Sobic001G434900 Sobic007G006600 Sobic007G006600 Sobic003G367300--Sobic007G006600 Sobic003G367300--Sobic004G271700 Sobic009G079300 Sobic009G079300 Sobic003G367300--Sobic009G079300 Sobic001G436000 Sobic001G436000 Sobic003G367300--Sobic001G436000 Sobic003G367300--Sobic003G002400 Sobic003G367300--Sobic001G162100 Sobic006G225600--Sobic004G234900 Sobic002G251700 Sobic002G251700 Sobic006G225600--Sobic002G251700 Sobic006G225600--Sobic001G162100 Sobic001G098200 Sobic001G098200 Sobic006G225600--Sobic001G098200 Sobic003G295400 Sobic003G295400 Sobic006G225600--Sobic003G295400 Sobic006G225600--Sobic002G122700 Sobic006G225600--Sobic004G274400 Sobic001G051200 Sobic001G051200 Sobic006G225600--Sobic001G051200 Sobic006G225600--Sobic001G434900 Sobic002G296300 Sobic002G296300 Sobic005G176000--Sobic002G296300 Sobic005G176000--Sobic003G248600 Sobic005G176000--Sobic003G220600 Sobic001G403700 Sobic001G403700 Sobic005G176000--Sobic001G403700 Sobic010G253800 Sobic010G253800 Sobic005G176000--Sobic010G253800 Sobic003G115800 Sobic003G115800 Sobic005G176000--Sobic003G115800 Sobic001G283500 Sobic001G283500 Sobic005G176000--Sobic001G283500 Sobic005G176000--Sobic001G434900 Sobic007G186300 Sobic007G186300 Sobic005G176000--Sobic007G186300 Sobic003G248600--Sobic003G220600 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic003G248600--Sobic005G176000 Sobic003G248600--Sobic004G321900 Sobic003G248600--Sobic001G403700 Sobic009G146100 Sobic009G146100 Sobic003G248600--Sobic009G146100 Sobic003G248600--Sobic002G296300 Sobic001G073000 Sobic001G073000 Sobic003G248600--Sobic001G073000 Sobic001G162100--Sobic006G225600 Sobic001G162100--Sobic004G234900 Sobic009G059700 Sobic009G059700 Sobic001G162100--Sobic009G059700 Sobic008G016900 Sobic008G016900 Sobic001G162100--Sobic008G016900 Sobic010G062800 Sobic010G062800 Sobic001G162100--Sobic010G062800 Sobic001G162100--Sobic002G122700 Sobic001G162100--Sobic001G434900 Sobic001G162100--Sobic001G098200 Sobic009G219900 Sobic009G219900 Sobic001G162100--Sobic009G219900 Sobic006G148200 Sobic006G148200 Sobic004G274400--Sobic006G148200 Sobic001G323000 Sobic001G323000 Sobic004G274400--Sobic001G323000 Sobic004G274400--Sobic006G225600 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic002G131900 Sobic002G131900 Sobic004G274400--Sobic002G131900 Sobic003G312200 Sobic003G312200 Sobic004G274400--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500
Octagon: transcription factors


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