Gene annotation
Transcriptome id Sobic.003G295900.1,Sobic.003G295900.2
Synonym HSFA4C, AT-HSFA4C, RHA1, Sb03g034630
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
HSF-type DNA-binding domain containing protein, expressed
UniProt A0A1W0VZI6 , C5XK40
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF154
NCBI CDD KOG0627; Heat shock transcription factor
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G45710 : winged-helix DNA-binding transcription factor family protein
RAP-DB (Rice) LOC_Os01g54550.1 : HSF-type DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020519 , Zm00025a040051 , Zm00025a016308
Brachypodium KQK12029 , PNT72861 , PNT72862 , KQK12030 , KQK09735
Barley HORVU5Hr1G080840.1 , HORVU6Hr1G017910.1
Wheat TraesCS5B02G315600 , TraesCS5B02G315600 , TraesCS4A02G322300 , TraesCS5B02G556200 , TraesCS5A02G314700 , TraesCS6A02G098800 , TraesCS5D02G321000 , TraesCS5D02G553300 , TraesCS6D02G083800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G295900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
2 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
3 Sobic.007G216100 expressed protein -
4 Sobic.010G230500 expressed protein -
5 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
6 Sobic.002G290400 Protein kinase superfamily protein(PubMedID : 26465154)@serine/threonine-protein kinase SRPK1, putative, expressed -
7 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
8 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
9 Sobic.001G031600 calmodulin binding protein, putative, expressed -
10 Sobic.006G163000 src homology-3 domain protein 3, putative, expressed -
11 Sobic.006G092400 calmodulin binding protein, putative, expressed -
12 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
13 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
14 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
15 Sobic.010G074300 smr domain containing protein, expressed -
16 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
18 Sobic.002G413000 AAA-type ATPase family protein, putative, expressed -
19 Sobic.002G204200 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
20 Sobic.009G258100 early-responsive to dehydration protein-related, putative, expressed -


Gene co-expression network
sample Sobic003G295900 Sobic003G295900 Sobic006G209400 Sobic006G209400 Sobic003G295900--Sobic006G209400 Sobic002G375300 Sobic002G375300 Sobic003G295900--Sobic002G375300 Sobic007G216100 Sobic007G216100 Sobic003G295900--Sobic007G216100 Sobic010G230500 Sobic010G230500 Sobic003G295900--Sobic010G230500 Sobic003G099100 Sobic003G099100 Sobic003G295900--Sobic003G099100 Sobic002G290400 Sobic002G290400 Sobic003G295900--Sobic002G290400 Sobic002G045300 Sobic002G045300 Sobic003G295900--Sobic002G045300 Sobic003G416400 Sobic003G416400 Sobic003G295900--Sobic003G416400 Sobic001G031600 Sobic001G031600 Sobic003G295900--Sobic001G031600 Sobic006G092400 Sobic006G092400 Sobic006G209400--Sobic006G092400 Sobic006G209400--Sobic003G295900 Sobic006G209400--Sobic002G290400 Sobic001G541100 Sobic001G541100 Sobic006G209400--Sobic001G541100 Sobic006G209400--Sobic001G031600 Sobic009G165800 Sobic009G165800 Sobic006G209400--Sobic009G165800 Sobic001G395400 Sobic001G395400 Sobic006G209400--Sobic001G395400 Sobic003G076500 Sobic003G076500 Sobic006G209400--Sobic003G076500 Sobic010G116400 Sobic010G116400 Sobic006G209400--Sobic010G116400 Sobic001G158500 Sobic001G158500 Sobic002G375300--Sobic001G158500 Sobic002G375300--Sobic001G395400 Sobic010G000900 Sobic010G000900 Sobic002G375300--Sobic010G000900 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic003G098000 Sobic003G098000 Sobic002G375300--Sobic003G098000 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic004G102400 Sobic004G102400 Sobic002G375300--Sobic004G102400 Sobic007G216100--Sobic010G000900 Sobic002G247500 Sobic002G247500 Sobic007G216100--Sobic002G247500 Sobic003G117900 Sobic003G117900 Sobic007G216100--Sobic003G117900 Sobic007G216100--Sobic003G295900 Sobic001G106700 Sobic001G106700 Sobic007G216100--Sobic001G106700 Sobic004G167400 Sobic004G167400 Sobic007G216100--Sobic004G167400 Sobic001G388200 Sobic001G388200 Sobic007G216100--Sobic001G388200 Sobic007G216100--Sobic002G375300 Sobic003G370900 Sobic003G370900 Sobic007G216100--Sobic003G370900 Sobic010G074300 Sobic010G074300 Sobic010G230500--Sobic010G074300 Sobic010G230500--Sobic003G295900 Sobic004G189200 Sobic004G189200 Sobic010G230500--Sobic004G189200 Sobic008G089900 Sobic008G089900 Sobic010G230500--Sobic008G089900 Sobic004G103000 Sobic004G103000 Sobic010G230500--Sobic004G103000 Sobic002G358800 Sobic002G358800 Sobic010G230500--Sobic002G358800 Sobic008G077500 Sobic008G077500 Sobic010G230500--Sobic008G077500 Sobic007G090900 Sobic007G090900 Sobic010G230500--Sobic007G090900 Sobic010G230500--Sobic002G290400 Sobic009G123600 Sobic009G123600 Sobic003G099100--Sobic009G123600 Sobic002G385900 Sobic002G385900 Sobic003G099100--Sobic002G385900 Sobic004G202500 Sobic004G202500 Sobic003G099100--Sobic004G202500 Sobic009G222500 Sobic009G222500 Sobic003G099100--Sobic009G222500 Sobic010G027600 Sobic010G027600 Sobic003G099100--Sobic010G027600 Sobic009G135600 Sobic009G135600 Sobic003G099100--Sobic009G135600 Sobic006G049700 Sobic006G049700 Sobic003G099100--Sobic006G049700 Sobic010G278200 Sobic010G278200 Sobic003G099100--Sobic010G278200 Sobic004G115350 Sobic004G115350 Sobic003G099100--Sobic004G115350 Sobic002G290400--Sobic006G209400 Sobic002G290400--Sobic003G076500 Sobic010G251300 Sobic010G251300 Sobic002G290400--Sobic010G251300 Sobic003G309200 Sobic003G309200 Sobic002G290400--Sobic003G309200 Sobic001G414500 Sobic001G414500 Sobic002G290400--Sobic001G414500 Sobic002G290400--Sobic008G089900 Sobic002G290400--Sobic006G092400 Sobic004G118200 Sobic004G118200 Sobic002G290400--Sobic004G118200 Sobic002G290400--Sobic010G230500 Sobic001G433400 Sobic001G433400 Sobic002G045300--Sobic001G433400 Sobic010G042100 Sobic010G042100 Sobic002G045300--Sobic010G042100 Sobic003G253000 Sobic003G253000 Sobic002G045300--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic002G045300--Sobic003G220600 Sobic004G049900 Sobic004G049900 Sobic002G045300--Sobic004G049900 Sobic003G367451 Sobic003G367451 Sobic002G045300--Sobic003G367451 Sobic003G130800 Sobic003G130800 Sobic002G045300--Sobic003G130800 Sobic002G045300--Sobic009G135600 Sobic010G101500 Sobic010G101500 Sobic002G045300--Sobic010G101500 Sobic003G416400--Sobic001G395400 Sobic002G105200 Sobic002G105200 Sobic003G416400--Sobic002G105200 Sobic003G416400--Sobic002G375300 Sobic001G057800 Sobic001G057800 Sobic003G416400--Sobic001G057800 Sobic003G077900 Sobic003G077900 Sobic003G416400--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic003G416400--Sobic002G400000 Sobic003G201900 Sobic003G201900 Sobic003G416400--Sobic003G201900 Sobic003G416400--Sobic002G385900 Sobic001G323000 Sobic001G323000 Sobic003G416400--Sobic001G323000 Sobic001G105500 Sobic001G105500 Sobic001G031600--Sobic001G105500 Sobic002G413000 Sobic002G413000 Sobic001G031600--Sobic002G413000 Sobic001G031600--Sobic006G209400 Sobic009G193400 Sobic009G193400 Sobic001G031600--Sobic009G193400 Sobic003G002400 Sobic003G002400 Sobic001G031600--Sobic003G002400 Sobic001G031600--Sobic003G309200 Sobic007G019800 Sobic007G019800 Sobic001G031600--Sobic007G019800 Sobic004G031600 Sobic004G031600 Sobic001G031600--Sobic004G031600 Sobic001G031600--Sobic001G541100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.