Gene annotation
Transcriptome id Sobic.006G209400.1
Synonym Sb06g028030
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5YFL6
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF329
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT4G28400 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os04g52000.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a009851 , Zm00025a056990
Brachypodium KQJ84483
Barley -
Wheat TraesCS2A02G428500 , TraesCS2A02G428500 , TraesCS2B02G449200 , TraesCS2B02G449200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G092400 calmodulin binding protein, putative, expressed -
2 Sobic.003G295900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
3 Sobic.002G290400 Protein kinase superfamily protein(PubMedID : 26465154)@serine/threonine-protein kinase SRPK1, putative, expressed -
4 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
5 Sobic.001G031600 calmodulin binding protein, putative, expressed -
6 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
7 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
8 Sobic.003G076500 MYB family transcription factor, putative, expressed -
9 Sobic.010G116400 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
10 Sobic.001G503300 tyrosine protein kinase domain containing protein, putative, expressed -
11 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
12 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
13 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
14 Sobic.004G117900 expressed protein -
15 Sobic.010G074300 smr domain containing protein, expressed -
16 Sobic.001G126100 OsFBO16 - F-box and other domain containing protein, expressed -
17 Sobic.007G019800 expressed protein -
18 Sobic.005G105000 STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
19 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
20 Sobic.007G159500 uncharacterized protein, YigZ family, putative, expressed -


Gene co-expression network
sample Sobic006G209400 Sobic006G209400 Sobic006G092400 Sobic006G092400 Sobic006G209400--Sobic006G092400 Sobic003G295900 Sobic003G295900 Sobic006G209400--Sobic003G295900 Sobic002G290400 Sobic002G290400 Sobic006G209400--Sobic002G290400 Sobic001G541100 Sobic001G541100 Sobic006G209400--Sobic001G541100 Sobic001G031600 Sobic001G031600 Sobic006G209400--Sobic001G031600 Sobic009G165800 Sobic009G165800 Sobic006G209400--Sobic009G165800 Sobic001G395400 Sobic001G395400 Sobic006G209400--Sobic001G395400 Sobic003G076500 Sobic003G076500 Sobic006G209400--Sobic003G076500 Sobic010G116400 Sobic010G116400 Sobic006G209400--Sobic010G116400 Sobic007G179800 Sobic007G179800 Sobic006G092400--Sobic007G179800 Sobic002G130800 Sobic002G130800 Sobic006G092400--Sobic002G130800 Sobic006G092400--Sobic006G209400 Sobic010G074300 Sobic010G074300 Sobic006G092400--Sobic010G074300 Sobic004G235000 Sobic004G235000 Sobic006G092400--Sobic004G235000 Sobic001G508100 Sobic001G508100 Sobic006G092400--Sobic001G508100 Sobic003G220800 Sobic003G220800 Sobic006G092400--Sobic003G220800 Sobic006G090000 Sobic006G090000 Sobic006G092400--Sobic006G090000 Sobic010G147100 Sobic010G147100 Sobic006G092400--Sobic010G147100 Sobic003G295900--Sobic006G209400 Sobic002G375300 Sobic002G375300 Sobic003G295900--Sobic002G375300 Sobic007G216100 Sobic007G216100 Sobic003G295900--Sobic007G216100 Sobic010G230500 Sobic010G230500 Sobic003G295900--Sobic010G230500 Sobic003G099100 Sobic003G099100 Sobic003G295900--Sobic003G099100 Sobic003G295900--Sobic002G290400 Sobic002G045300 Sobic002G045300 Sobic003G295900--Sobic002G045300 Sobic003G416400 Sobic003G416400 Sobic003G295900--Sobic003G416400 Sobic003G295900--Sobic001G031600 Sobic002G290400--Sobic006G209400 Sobic002G290400--Sobic003G076500 Sobic010G251300 Sobic010G251300 Sobic002G290400--Sobic010G251300 Sobic003G309200 Sobic003G309200 Sobic002G290400--Sobic003G309200 Sobic001G414500 Sobic001G414500 Sobic002G290400--Sobic001G414500 Sobic008G089900 Sobic008G089900 Sobic002G290400--Sobic008G089900 Sobic002G290400--Sobic006G092400 Sobic004G118200 Sobic004G118200 Sobic002G290400--Sobic004G118200 Sobic002G290400--Sobic010G230500 Sobic009G219000 Sobic009G219000 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic009G219900 Sobic009G219900 Sobic001G541100--Sobic009G219900 Sobic009G138100 Sobic009G138100 Sobic001G541100--Sobic009G138100 Sobic001G541100--Sobic006G209400 Sobic001G541100--Sobic001G395400 Sobic010G130000 Sobic010G130000 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic002G134600 Sobic002G134600 Sobic001G541100--Sobic002G134600 Sobic001G031600--Sobic001G105500 Sobic002G413000 Sobic002G413000 Sobic001G031600--Sobic002G413000 Sobic001G031600--Sobic006G209400 Sobic009G193400 Sobic009G193400 Sobic001G031600--Sobic009G193400 Sobic003G002400 Sobic003G002400 Sobic001G031600--Sobic003G002400 Sobic001G031600--Sobic003G309200 Sobic007G019800 Sobic007G019800 Sobic001G031600--Sobic007G019800 Sobic004G031600 Sobic004G031600 Sobic001G031600--Sobic004G031600 Sobic001G031600--Sobic001G541100 Sobic001G080700 Sobic001G080700 Sobic009G165800--Sobic001G080700 Sobic001G047400 Sobic001G047400 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic010G083700 Sobic010G083700 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic007G166100 Sobic007G166100 Sobic001G395400--Sobic007G166100 Sobic002G400000 Sobic002G400000 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic003G077900 Sobic003G077900 Sobic001G395400--Sobic003G077900 Sobic010G000900 Sobic010G000900 Sobic001G395400--Sobic010G000900 Sobic001G057800 Sobic001G057800 Sobic001G395400--Sobic001G057800 Sobic001G395400--Sobic009G165800 Sobic003G076500--Sobic002G290400 Sobic003G076500--Sobic006G209400 Sobic003G076500--Sobic006G092400 Sobic001G162100 Sobic001G162100 Sobic003G076500--Sobic001G162100 Sobic003G076500--Sobic010G130000 Sobic003G076500--Sobic001G541100 Sobic003G076500--Sobic003G309200 Sobic003G076500--Sobic009G219900 Sobic003G076500--Sobic001G031600 Sobic001G070000 Sobic001G070000 Sobic010G116400--Sobic001G070000 Sobic010G116400--Sobic006G209400 Sobic009G217100 Sobic009G217100 Sobic010G116400--Sobic009G217100 Sobic010G116400--Sobic002G130800 Sobic003G117900 Sobic003G117900 Sobic010G116400--Sobic003G117900 Sobic001G185500 Sobic001G185500 Sobic010G116400--Sobic001G185500 Sobic010G116400--Sobic002G375300 Sobic010G116400--Sobic006G092400 Sobic010G116400--Sobic010G251000
Octagon: transcription factors


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