Gene annotation
Transcriptome id Sobic.010G116400.1
Synonym Sb10g010290
Functional annotation amino acid transporter, putative, expressed
UniProt C5Z8K2
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF237
NCBI CDD KOG1305; Amino acid transporter protein
KEGG Orthology K14207; SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G30390 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os06g16420.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a032604 , Zm00025a050465
Brachypodium KQK01511 , KQK18611
Barley HORVU7Hr1G065280.2 , HORVU7Hr1G065280.3 , HORVU7Hr1G065280.1 , HORVU7Hr1G065280.6 , HORVU7Hr1G065280.7 , HORVU7Hr1G065280.4 , HORVU7Hr1G065280.5 , HORVU0Hr1G020160.2 , HORVU0Hr1G020160.1
Wheat TraesCS7A02G212200 , TraesCS7B02G119000 , TraesCS7D02G213900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G116400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.009G217100 phosphatidylinositol transfer, putative, expressed -
4 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
5 Sobic.003G117900 protein kinase, putative, expressed -
6 Sobic.001G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
8 Sobic.006G092400 calmodulin binding protein, putative, expressed -
9 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
10 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
11 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
12 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
13 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
14 Sobic.010G000900 spotted leaf 11, putative, expressed -
15 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
16 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
17 Sobic.010G074300 smr domain containing protein, expressed -
18 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
19 Sobic.001G473300 stage II sporulation protein E, putative, expressed -
20 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -


Gene co-expression network
sample Sobic010G116400 Sobic010G116400 Sobic001G070000 Sobic001G070000 Sobic010G116400--Sobic001G070000 Sobic006G209400 Sobic006G209400 Sobic010G116400--Sobic006G209400 Sobic009G217100 Sobic009G217100 Sobic010G116400--Sobic009G217100 Sobic002G130800 Sobic002G130800 Sobic010G116400--Sobic002G130800 Sobic003G117900 Sobic003G117900 Sobic010G116400--Sobic003G117900 Sobic001G185500 Sobic001G185500 Sobic010G116400--Sobic001G185500 Sobic002G375300 Sobic002G375300 Sobic010G116400--Sobic002G375300 Sobic006G092400 Sobic006G092400 Sobic010G116400--Sobic006G092400 Sobic010G251000 Sobic010G251000 Sobic010G116400--Sobic010G251000 Sobic001G406100 Sobic001G406100 Sobic001G070000--Sobic001G406100 Sobic001G070000--Sobic010G116400 Sobic008G047400 Sobic008G047400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic006G209400--Sobic006G092400 Sobic003G295900 Sobic003G295900 Sobic006G209400--Sobic003G295900 Sobic002G290400 Sobic002G290400 Sobic006G209400--Sobic002G290400 Sobic001G541100 Sobic001G541100 Sobic006G209400--Sobic001G541100 Sobic001G031600 Sobic001G031600 Sobic006G209400--Sobic001G031600 Sobic009G165800 Sobic009G165800 Sobic006G209400--Sobic009G165800 Sobic001G395400 Sobic001G395400 Sobic006G209400--Sobic001G395400 Sobic003G076500 Sobic003G076500 Sobic006G209400--Sobic003G076500 Sobic006G209400--Sobic010G116400 Sobic009G259400 Sobic009G259400 Sobic009G217100--Sobic009G259400 Sobic010G000900 Sobic010G000900 Sobic009G217100--Sobic010G000900 Sobic007G007000 Sobic007G007000 Sobic009G217100--Sobic007G007000 Sobic002G352600 Sobic002G352600 Sobic009G217100--Sobic002G352600 Sobic002G226900 Sobic002G226900 Sobic009G217100--Sobic002G226900 Sobic004G006200 Sobic004G006200 Sobic009G217100--Sobic004G006200 Sobic004G348300 Sobic004G348300 Sobic009G217100--Sobic004G348300 Sobic001G137100 Sobic001G137100 Sobic009G217100--Sobic001G137100 Sobic009G217100--Sobic010G251000 Sobic002G130800--Sobic006G092400 Sobic002G130800--Sobic001G137100 Sobic004G118200 Sobic004G118200 Sobic002G130800--Sobic004G118200 Sobic010G147100 Sobic010G147100 Sobic002G130800--Sobic010G147100 Sobic002G130800--Sobic006G090500 Sobic010G228400 Sobic010G228400 Sobic002G130800--Sobic010G228400 Sobic004G233200 Sobic004G233200 Sobic002G130800--Sobic004G233200 Sobic002G130800--Sobic009G217100 Sobic001G481900 Sobic001G481900 Sobic002G130800--Sobic001G481900 Sobic010G042100 Sobic010G042100 Sobic003G117900--Sobic010G042100 Sobic003G370900 Sobic003G370900 Sobic003G117900--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic003G117900--Sobic001G106700 Sobic001G329100 Sobic001G329100 Sobic003G117900--Sobic001G329100 Sobic001G007200 Sobic001G007200 Sobic003G117900--Sobic001G007200 Sobic004G167400 Sobic004G167400 Sobic003G117900--Sobic004G167400 Sobic004G067100 Sobic004G067100 Sobic003G117900--Sobic004G067100 Sobic002G045300 Sobic002G045300 Sobic003G117900--Sobic002G045300 Sobic010G253800 Sobic010G253800 Sobic003G117900--Sobic010G253800 Sobic003G228100 Sobic003G228100 Sobic001G185500--Sobic003G228100 Sobic001G185500--Sobic010G116400 Sobic001G185500--Sobic001G070000 Sobic001G103200 Sobic001G103200 Sobic001G185500--Sobic001G103200 Sobic003G098000 Sobic003G098000 Sobic001G185500--Sobic003G098000 Sobic001G185500--Sobic001G541100 Sobic001G158500 Sobic001G158500 Sobic001G185500--Sobic001G158500 Sobic004G102400 Sobic004G102400 Sobic001G185500--Sobic004G102400 Sobic001G185500--Sobic002G375300 Sobic002G375300--Sobic001G158500 Sobic002G375300--Sobic001G395400 Sobic002G375300--Sobic010G000900 Sobic003G416400 Sobic003G416400 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic002G375300--Sobic003G098000 Sobic002G375300--Sobic006G092400 Sobic002G375300--Sobic002G352600 Sobic002G375300--Sobic004G102400 Sobic007G179800 Sobic007G179800 Sobic006G092400--Sobic007G179800 Sobic006G092400--Sobic002G130800 Sobic006G092400--Sobic006G209400 Sobic010G074300 Sobic010G074300 Sobic006G092400--Sobic010G074300 Sobic004G235000 Sobic004G235000 Sobic006G092400--Sobic004G235000 Sobic001G508100 Sobic001G508100 Sobic006G092400--Sobic001G508100 Sobic003G220800 Sobic003G220800 Sobic006G092400--Sobic003G220800 Sobic006G090000 Sobic006G090000 Sobic006G092400--Sobic006G090000 Sobic006G092400--Sobic010G147100 Sobic001G007000 Sobic001G007000 Sobic010G251000--Sobic001G007000 Sobic001G080700 Sobic001G080700 Sobic010G251000--Sobic001G080700 Sobic006G200600 Sobic006G200600 Sobic010G251000--Sobic006G200600 Sobic004G066200 Sobic004G066200 Sobic010G251000--Sobic004G066200 Sobic004G121100 Sobic004G121100 Sobic010G251000--Sobic004G121100 Sobic001G392300 Sobic001G392300 Sobic010G251000--Sobic001G392300 Sobic001G047400 Sobic001G047400 Sobic010G251000--Sobic001G047400 Sobic004G353200 Sobic004G353200 Sobic010G251000--Sobic004G353200 Sobic008G046500 Sobic008G046500 Sobic010G251000--Sobic008G046500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.