Gene annotation
Transcriptome id Sobic.001G185500.1,Sobic.001G185500.2
Synonym Sb01g016110,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
MATE efflux family protein, putative, expressed
UniProt A0A1B6QJP2 , A0A1B6QJN4
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF88
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G21690 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g37490.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032299 , Zm00025a017375 , Zm00025a017379 , Zm00025a017378 , Zm00025a014788 , Zm00025a007085 , Zm00025a007080 , Zm00025a007083
Brachypodium KQK14356 , KQK14361 , KQK14360
Barley HORVU1Hr1G007910.10 , HORVU0Hr1G022320.3 , HORVU0Hr1G022320.2 , HORVU0Hr1G022320.1 , HORVU3Hr1G110460.5 , HORVU3Hr1G110460.4 , HORVU3Hr1G110460.6 , HORVU3Hr1G110460.1 , HORVU3Hr1G110460.3 , HORVU3Hr1G110460.2 , HORVU5Hr1G082890.9 , HORVU1Hr1G007910.1 , HORVU1Hr1G007910.2 , HORVU1Hr1G007910.3 , HORVU1Hr1G007910.4 , HORVU1Hr1G007910.5 , HORVU1Hr1G007910.6 , HORVU1Hr1G007910.7 , HORVU1Hr1G007910.8 , HORVU1Hr1G007910.9 , HORVU5Hr1G082890.5 , HORVU5Hr1G082890.10 , HORVU5Hr1G082890.11 , HORVU5Hr1G082890.12 , HORVU5Hr1G082890.8 , HORVU5Hr1G082890.2 , HORVU5Hr1G082890.3 , HORVU5Hr1G082890.1 , HORVU5Hr1G082890.6 , HORVU5Hr1G082890.7
Wheat TraesCS7B02G030600 , TraesCS5D02G332300 , TraesCS2A02G222300 , TraesCSU02G124400 , TraesCS3B02G563200 , TraesCS3B02G563200 , TraesCS1B02G037000 , TraesCSU02G124400 , TraesCS5A02G326300 , TraesCS3A02G499200 , TraesCS5A02G326300 , TraesCS5A02G326300 , TraesCS3D02G506700 , TraesCS5A02G326300 , TraesCS5A02G553200 , TraesCS5A02G326300 , TraesCS3D02G506100 , TraesCS1A02G029900 , TraesCS7A02G130300 , TraesCS3B02G562400 , TraesCS3B02G562400 , TraesCS3D02G506200 , TraesCS2D02G228200 , TraesCS2D02G228200 , TraesCS5A02G326700 , TraesCS3B02G563700 , TraesCS2B02G247700 , TraesCS2B02G247700 , TraesCS3B02G563100 , TraesCS3B02G563100 , TraesCS3A02G499300 , TraesCS4B02G388800 , TraesCS3B02G485100 , TraesCS3D02G506100 , TraesCSU02G124400 , TraesCSU02G124400 , TraesCS3B02G563400 , TraesCS3B02G563400 , TraesCS3B02G563400 , TraesCS3D02G506500 , TraesCS5B02G326600 , TraesCS3A02G499200 , TraesCS3B02G562500 , TraesCS1D02G030400
Populus -


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cDNA sequences
Sobic.001G185500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G228100 cytochrome P450 72A1, putative, expressed -
2 Sobic.010G116400 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
3 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
4 Sobic.001G103200 DNA binding protein, putative, expressed -
5 Sobic.003G098000 armadillo/beta-catenin repeat family protein, putative, expressed K08332: vacuolar protein 8
6 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
7 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
8 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
9 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
10 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
11 Sobic.003G117900 protein kinase, putative, expressed -
12 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
14 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
15 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
16 Sobic.001G350900 OsFBO14 - F-box and other domain containing protein, expressed -
17 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
18 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
19 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
20 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G185500 Sobic001G185500 Sobic003G228100 Sobic003G228100 Sobic001G185500--Sobic003G228100 Sobic010G116400 Sobic010G116400 Sobic001G185500--Sobic010G116400 Sobic001G070000 Sobic001G070000 Sobic001G185500--Sobic001G070000 Sobic001G103200 Sobic001G103200 Sobic001G185500--Sobic001G103200 Sobic003G098000 Sobic003G098000 Sobic001G185500--Sobic003G098000 Sobic001G541100 Sobic001G541100 Sobic001G185500--Sobic001G541100 Sobic001G158500 Sobic001G158500 Sobic001G185500--Sobic001G158500 Sobic004G102400 Sobic004G102400 Sobic001G185500--Sobic004G102400 Sobic002G375300 Sobic002G375300 Sobic001G185500--Sobic002G375300 Sobic003G228100--Sobic001G185500 Sobic001G089800 Sobic001G089800 Sobic003G228100--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic003G228100--Sobic001G003000 Sobic001G350700 Sobic001G350700 Sobic003G228100--Sobic001G350700 Sobic004G042300 Sobic004G042300 Sobic003G228100--Sobic004G042300 Sobic008G093000 Sobic008G093000 Sobic003G228100--Sobic008G093000 Sobic003G228100--Sobic003G098000 Sobic004G005200 Sobic004G005200 Sobic003G228100--Sobic004G005200 Sobic003G352600 Sobic003G352600 Sobic003G228100--Sobic003G352600 Sobic010G116400--Sobic001G070000 Sobic006G209400 Sobic006G209400 Sobic010G116400--Sobic006G209400 Sobic009G217100 Sobic009G217100 Sobic010G116400--Sobic009G217100 Sobic002G130800 Sobic002G130800 Sobic010G116400--Sobic002G130800 Sobic003G117900 Sobic003G117900 Sobic010G116400--Sobic003G117900 Sobic010G116400--Sobic001G185500 Sobic010G116400--Sobic002G375300 Sobic006G092400 Sobic006G092400 Sobic010G116400--Sobic006G092400 Sobic010G251000 Sobic010G251000 Sobic010G116400--Sobic010G251000 Sobic001G406100 Sobic001G406100 Sobic001G070000--Sobic001G406100 Sobic001G070000--Sobic010G116400 Sobic008G047400 Sobic008G047400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic001G516100 Sobic001G516100 Sobic001G103200--Sobic001G516100 Sobic001G358300 Sobic001G358300 Sobic001G103200--Sobic001G358300 Sobic004G271700 Sobic004G271700 Sobic001G103200--Sobic004G271700 Sobic001G510700 Sobic001G510700 Sobic001G103200--Sobic001G510700 Sobic009G135100 Sobic009G135100 Sobic001G103200--Sobic009G135100 Sobic009G219900 Sobic009G219900 Sobic001G103200--Sobic009G219900 Sobic004G350300 Sobic004G350300 Sobic001G103200--Sobic004G350300 Sobic001G350900 Sobic001G350900 Sobic001G103200--Sobic001G350900 Sobic003G002400 Sobic003G002400 Sobic001G103200--Sobic003G002400 Sobic003G098000--Sobic002G375300 Sobic003G098000--Sobic004G102400 Sobic003G098000--Sobic003G228100 Sobic003G098000--Sobic004G042300 Sobic003G246700 Sobic003G246700 Sobic003G098000--Sobic003G246700 Sobic004G337200 Sobic004G337200 Sobic003G098000--Sobic004G337200 Sobic002G217400 Sobic002G217400 Sobic003G098000--Sobic002G217400 Sobic005G203800 Sobic005G203800 Sobic003G098000--Sobic005G203800 Sobic001G057800 Sobic001G057800 Sobic003G098000--Sobic001G057800 Sobic009G219000 Sobic009G219000 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic001G541100--Sobic009G219900 Sobic009G138100 Sobic009G138100 Sobic001G541100--Sobic009G138100 Sobic001G541100--Sobic006G209400 Sobic001G395400 Sobic001G395400 Sobic001G541100--Sobic001G395400 Sobic010G130000 Sobic010G130000 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic002G134600 Sobic002G134600 Sobic001G541100--Sobic002G134600 Sobic001G158500--Sobic004G102400 Sobic001G158500--Sobic001G057800 Sobic001G158500--Sobic002G375300 Sobic003G367451 Sobic003G367451 Sobic001G158500--Sobic003G367451 Sobic002G083266 Sobic002G083266 Sobic001G158500--Sobic002G083266 Sobic001G433400 Sobic001G433400 Sobic001G158500--Sobic001G433400 Sobic002G264400 Sobic002G264400 Sobic001G158500--Sobic002G264400 Sobic002G385900 Sobic002G385900 Sobic001G158500--Sobic002G385900 Sobic001G085900 Sobic001G085900 Sobic001G158500--Sobic001G085900 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic004G102400--Sobic001G158500 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G102400--Sobic004G042300 Sobic002G375300--Sobic001G158500 Sobic002G375300--Sobic001G395400 Sobic010G000900 Sobic010G000900 Sobic002G375300--Sobic010G000900 Sobic003G416400 Sobic003G416400 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic002G375300--Sobic003G098000 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic002G375300--Sobic004G102400
Octagon: transcription factors


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