Gene annotation
Transcriptome id Sobic.001G070000.2
Synonym ADF6, Sb01g006330, ATADF6
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
actin-depolymerizing factor, putative, expressed
UniProt C5WZ27
Pfam PF00241
Panther DB PTHR11913 PTHR11913:SF26
NCBI CDD KOG1735; Actin depolymerizing factor
KEGG Orthology K05765; cofilin
Gene Ontology GO:0005622; intracellular GO:0003779actin binding GO:0015629actin cytoskeleton


Orthologs (automatic annotation)
TAIR AT2G31200 : actin depolymerizing factor 6
RAP-DB (Rice) LOC_Os03g56790.1 : actin-depolymerizing factor, putative, expressed
MaizeGDB (Corn) Zm00025a016663 , Zm00025a008434
Brachypodium KQK12910
Barley HORVU5Hr1G100770.1 , HORVU5Hr1G100770.3 , HORVU5Hr1G100770.2
Wheat TraesCS5A02G416100 , TraesCS5D02G423800
Populus -


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cDNA sequences
Sobic.001G070000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
2 Sobic.010G116400 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
3 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
4 Sobic.006G090500 chloride channel C(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K05016: chloride channel 7
5 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
6 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
7 Sobic.003G403700 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K04551: ubiquitin B
8 Sobic.001G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.003G228100 cytochrome P450 72A1, putative, expressed -
11 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
12 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
13 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
14 Sobic.010G074300 smr domain containing protein, expressed -
15 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
16 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
17 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
18 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
19 Sobic.009G190700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
20 Sobic.004G118200 reticulon domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G070000 Sobic001G070000 Sobic001G406100 Sobic001G406100 Sobic001G070000--Sobic001G406100 Sobic010G116400 Sobic010G116400 Sobic001G070000--Sobic010G116400 Sobic008G047400 Sobic008G047400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G185500 Sobic001G185500 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic001G406100--Sobic001G070000 Sobic010G074300 Sobic010G074300 Sobic001G406100--Sobic010G074300 Sobic001G406100--Sobic008G047400 Sobic002G358400 Sobic002G358400 Sobic001G406100--Sobic002G358400 Sobic004G103000 Sobic004G103000 Sobic001G406100--Sobic004G103000 Sobic008G187100 Sobic008G187100 Sobic001G406100--Sobic008G187100 Sobic004G070700 Sobic004G070700 Sobic001G406100--Sobic004G070700 Sobic002G204200 Sobic002G204200 Sobic001G406100--Sobic002G204200 Sobic009G207300 Sobic009G207300 Sobic001G406100--Sobic009G207300 Sobic010G116400--Sobic001G070000 Sobic006G209400 Sobic006G209400 Sobic010G116400--Sobic006G209400 Sobic009G217100 Sobic009G217100 Sobic010G116400--Sobic009G217100 Sobic002G130800 Sobic002G130800 Sobic010G116400--Sobic002G130800 Sobic003G117900 Sobic003G117900 Sobic010G116400--Sobic003G117900 Sobic010G116400--Sobic001G185500 Sobic002G375300 Sobic002G375300 Sobic010G116400--Sobic002G375300 Sobic006G092400 Sobic006G092400 Sobic010G116400--Sobic006G092400 Sobic010G251000 Sobic010G251000 Sobic010G116400--Sobic010G251000 Sobic008G124900 Sobic008G124900 Sobic008G047400--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic008G047400--Sobic010G278200 Sobic006G033200 Sobic006G033200 Sobic008G047400--Sobic006G033200 Sobic004G202500 Sobic004G202500 Sobic008G047400--Sobic004G202500 Sobic003G302900 Sobic003G302900 Sobic008G047400--Sobic003G302900 Sobic008G047400--Sobic010G074300 Sobic004G255700 Sobic004G255700 Sobic008G047400--Sobic004G255700 Sobic010G147100 Sobic010G147100 Sobic008G047400--Sobic010G147100 Sobic003G309200 Sobic003G309200 Sobic008G047400--Sobic003G309200 Sobic006G090500--Sobic002G130800 Sobic001G350700 Sobic001G350700 Sobic006G090500--Sobic001G350700 Sobic006G135600 Sobic006G135600 Sobic006G090500--Sobic006G135600 Sobic001G481900 Sobic001G481900 Sobic006G090500--Sobic001G481900 Sobic008G093000 Sobic008G093000 Sobic006G090500--Sobic008G093000 Sobic004G005200 Sobic004G005200 Sobic006G090500--Sobic004G005200 Sobic006G090500--Sobic001G070000 Sobic004G233200 Sobic004G233200 Sobic006G090500--Sobic004G233200 Sobic001G159600 Sobic001G159600 Sobic006G090500--Sobic001G159600 Sobic003G243600--Sobic001G070000 Sobic007G033800 Sobic007G033800 Sobic003G243600--Sobic007G033800 Sobic004G136600 Sobic004G136600 Sobic003G243600--Sobic004G136600 Sobic001G339500 Sobic001G339500 Sobic003G243600--Sobic001G339500 Sobic003G214500 Sobic003G214500 Sobic003G243600--Sobic003G214500 Sobic010G027000 Sobic010G027000 Sobic003G243600--Sobic010G027000 Sobic006G254100 Sobic006G254100 Sobic003G243600--Sobic006G254100 Sobic001G302200 Sobic001G302200 Sobic003G243600--Sobic001G302200 Sobic003G350800 Sobic003G350800 Sobic003G243600--Sobic003G350800 Sobic001G488700 Sobic001G488700 Sobic008G059100--Sobic001G488700 Sobic002G187700 Sobic002G187700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic007G164000 Sobic007G164000 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic003G403700--Sobic001G070000 Sobic003G087000 Sobic003G087000 Sobic003G403700--Sobic003G087000 Sobic010G131900 Sobic010G131900 Sobic003G403700--Sobic010G131900 Sobic003G403700--Sobic004G005200 Sobic010G061800 Sobic010G061800 Sobic003G403700--Sobic010G061800 Sobic001G203900 Sobic001G203900 Sobic003G403700--Sobic001G203900 Sobic004G181900 Sobic004G181900 Sobic003G403700--Sobic004G181900 Sobic003G403700--Sobic001G406100 Sobic001G219300 Sobic001G219300 Sobic003G403700--Sobic001G219300 Sobic003G228100 Sobic003G228100 Sobic001G185500--Sobic003G228100 Sobic001G185500--Sobic010G116400 Sobic001G185500--Sobic001G070000 Sobic001G103200 Sobic001G103200 Sobic001G185500--Sobic001G103200 Sobic003G098000 Sobic003G098000 Sobic001G185500--Sobic003G098000 Sobic001G541100 Sobic001G541100 Sobic001G185500--Sobic001G541100 Sobic001G158500 Sobic001G158500 Sobic001G185500--Sobic001G158500 Sobic004G102400 Sobic004G102400 Sobic001G185500--Sobic004G102400 Sobic001G185500--Sobic002G375300 Sobic007G160700 Sobic007G160700 Sobic001G476700--Sobic007G160700 Sobic001G476700--Sobic004G103000 Sobic004G169000 Sobic004G169000 Sobic001G476700--Sobic004G169000 Sobic004G118200 Sobic004G118200 Sobic001G476700--Sobic004G118200 Sobic003G229300 Sobic003G229300 Sobic001G476700--Sobic003G229300 Sobic007G190000 Sobic007G190000 Sobic001G476700--Sobic007G190000 Sobic001G476700--Sobic010G074300 Sobic002G386100 Sobic002G386100 Sobic001G476700--Sobic002G386100 Sobic004G179300 Sobic004G179300 Sobic001G476700--Sobic004G179300
Octagon: transcription factors


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