Gene annotation
Transcriptome id Sobic.006G175800.1
Synonym
Functional annotation acyl-CoA thioesterase 2, putative, expressed
UniProt C6JSU7 , A0A1B6PMI6
Pfam PF00027 PF02551
Panther DB PTHR11066 PTHR11066:SF34
NCBI CDD KOG3016; Acyl-CoA thioesterase
KEGG Orthology K01068; acyl-coenzyme A thioesterase 1/2/4
Gene Ontology GO:0006637; acyl-CoA metabolic process


Orthologs (automatic annotation)
TAIR AT1G01710 : Acyl-CoA thioesterase family protein
RAP-DB (Rice) LOC_Os04g47120.1 : acyl-CoA thioesterase 2, putative, expressed
MaizeGDB (Corn) Zm00025a056834
Brachypodium KQJ84003
Barley HORVU2Hr1G096760.10 , HORVU2Hr1G096760.11 , HORVU2Hr1G096760.12 , HORVU2Hr1G096760.13 , HORVU2Hr1G096760.14 , HORVU2Hr1G096760.15 , HORVU2Hr1G096760.16 , HORVU2Hr1G096760.17 , HORVU2Hr1G096760.18 , HORVU2Hr1G096760.19 , HORVU2Hr1G096760.21 , HORVU2Hr1G096760.20 , HORVU2Hr1G096760.23 , HORVU2Hr1G096760.2 , HORVU2Hr1G096760.3 , HORVU2Hr1G096760.1 , HORVU2Hr1G096760.6 , HORVU2Hr1G096760.7 , HORVU2Hr1G096760.4 , HORVU2Hr1G096760.5 , HORVU2Hr1G096760.8 , HORVU2Hr1G096760.9
Wheat TraesCS2B02G427700 , TraesCS2B02G427700 , TraesCS2D02G405600 , TraesCS2D02G405600 , TraesCS2D02G405600 , TraesCS2A02G409200 , TraesCS2A02G409200
Populus -


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cDNA sequences
Sobic.006G175800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
2 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
3 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
4 Sobic.002G187700 expressed protein -
5 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
6 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
7 Sobic.003G043300 early fruit mRNA, putative, expressed -
8 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
9 Sobic.010G196500 zinc-binding protein, putative, expressed -
10 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
11 Sobic.009G201300 - -
12 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
13 Sobic.010G181100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD binding domain containing protein, expressed -
14 Sobic.001G053200 expressed protein -
15 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
16 Sobic.003G051000 expressed protein -
17 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
18 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
19 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
20 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase


Gene co-expression network
sample Sobic006G175800 Sobic006G175800 Sobic010G262500 Sobic010G262500 Sobic006G175800--Sobic010G262500 Sobic004G169000 Sobic004G169000 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic002G187700 Sobic002G187700 Sobic006G175800--Sobic002G187700 Sobic001G488700 Sobic001G488700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic003G043300 Sobic003G043300 Sobic006G175800--Sobic003G043300 Sobic001G500800 Sobic001G500800 Sobic006G175800--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic006G175800--Sobic010G196500 Sobic010G262500--Sobic006G175800 Sobic001G298700 Sobic001G298700 Sobic010G262500--Sobic001G298700 Sobic005G221250 Sobic005G221250 Sobic010G262500--Sobic005G221250 Sobic003G331300 Sobic003G331300 Sobic010G262500--Sobic003G331300 Sobic005G150350 Sobic005G150350 Sobic010G262500--Sobic005G150350 Sobic010G013200 Sobic010G013200 Sobic010G262500--Sobic010G013200 Sobic003G112800 Sobic003G112800 Sobic010G262500--Sobic003G112800 Sobic008G059100 Sobic008G059100 Sobic010G262500--Sobic008G059100 Sobic010G262500--Sobic001G488700 Sobic001G352400 Sobic001G352400 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic001G333800 Sobic001G333800 Sobic004G169000--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic004G169000--Sobic006G175800 Sobic003G229300 Sobic003G229300 Sobic004G169000--Sobic003G229300 Sobic004G042200 Sobic004G042200 Sobic004G169000--Sobic004G042200 Sobic005G106600 Sobic005G106600 Sobic004G169000--Sobic005G106600 Sobic002G359400 Sobic002G359400 Sobic002G305000--Sobic002G359400 Sobic009G201300 Sobic009G201300 Sobic002G305000--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic002G305000--Sobic003G354600 Sobic010G147100 Sobic010G147100 Sobic002G305000--Sobic010G147100 Sobic001G355800 Sobic001G355800 Sobic002G305000--Sobic001G355800 Sobic002G305000--Sobic006G175800 Sobic001G303100 Sobic001G303100 Sobic002G305000--Sobic001G303100 Sobic010G074300 Sobic010G074300 Sobic002G305000--Sobic010G074300 Sobic003G220800 Sobic003G220800 Sobic002G305000--Sobic003G220800 Sobic001G481900 Sobic001G481900 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000 Sobic001G488700--Sobic008G059100 Sobic001G488700--Sobic001G500800 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic004G233200 Sobic004G233200 Sobic001G488700--Sobic004G233200 Sobic001G488700--Sobic006G175800 Sobic003G302800 Sobic003G302800 Sobic001G488700--Sobic003G302800 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic010G020800 Sobic010G020800 Sobic003G190400--Sobic010G020800 Sobic003G301900 Sobic003G301900 Sobic003G190400--Sobic003G301900 Sobic003G190400--Sobic002G187700 Sobic005G084500 Sobic005G084500 Sobic003G190400--Sobic005G084500 Sobic007G190000 Sobic007G190000 Sobic003G190400--Sobic007G190000 Sobic004G356700 Sobic004G356700 Sobic003G190400--Sobic004G356700 Sobic002G146300 Sobic002G146300 Sobic003G190400--Sobic002G146300 Sobic003G190400--Sobic004G169000 Sobic003G190400--Sobic006G002300 Sobic003G043300--Sobic003G220800 Sobic003G043300--Sobic010G074300 Sobic003G043300--Sobic006G175800 Sobic010G251300 Sobic010G251300 Sobic003G043300--Sobic010G251300 Sobic001G136800 Sobic001G136800 Sobic003G043300--Sobic001G136800 Sobic001G257700 Sobic001G257700 Sobic003G043300--Sobic001G257700 Sobic008G077500 Sobic008G077500 Sobic003G043300--Sobic008G077500 Sobic004G040900 Sobic004G040900 Sobic003G043300--Sobic004G040900 Sobic003G051000 Sobic003G051000 Sobic003G043300--Sobic003G051000 Sobic001G500800--Sobic001G488700 Sobic001G500800--Sobic010G196500 Sobic001G381200 Sobic001G381200 Sobic001G500800--Sobic001G381200 Sobic006G213500 Sobic006G213500 Sobic001G500800--Sobic006G213500 Sobic002G001000 Sobic002G001000 Sobic001G500800--Sobic002G001000 Sobic001G500800--Sobic002G187700 Sobic003G403500 Sobic003G403500 Sobic001G500800--Sobic003G403500 Sobic001G500800--Sobic003G302800 Sobic001G500800--Sobic006G175800 Sobic010G196500--Sobic001G488700 Sobic010G196500--Sobic001G500800 Sobic003G086900 Sobic003G086900 Sobic010G196500--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic010G196500--Sobic002G193100 Sobic007G084300 Sobic007G084300 Sobic010G196500--Sobic007G084300 Sobic002G386100 Sobic002G386100 Sobic010G196500--Sobic002G386100 Sobic008G146900 Sobic008G146900 Sobic010G196500--Sobic008G146900 Sobic010G196500--Sobic001G381200 Sobic010G196500--Sobic002G187700
Octagon: transcription factors


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