Gene annotation
Transcriptome id Sobic.003G190400.1
Synonym Sb03g025470
Functional annotation rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed
UniProt C5XNN1
Pfam -
Panther DB PTHR32183 PTHR32183:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43945 : -
RAP-DB (Rice) LOC_Os01g23680.1 : rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed
MaizeGDB (Corn) Zm00025a042033 , Zm00025a028411 , Zm00025a038367
Brachypodium -
Barley HORVU0Hr1G021980.10 , HORVU0Hr1G021980.11 , HORVU0Hr1G021980.12 , HORVU0Hr1G021980.6 , HORVU0Hr1G021980.7 , HORVU0Hr1G021980.4 , HORVU0Hr1G021980.5 , HORVU0Hr1G021980.2 , HORVU0Hr1G021980.3 , HORVU0Hr1G021980.1 , HORVU0Hr1G021980.8 , HORVU0Hr1G021980.9
Wheat TraesCS7B02G290900 , TraesCS7D02G384900 , TraesCS7A02G389000
Populus -


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cDNA sequences
Sobic.003G190400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
2 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
3 Sobic.002G187700 expressed protein -
4 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
5 Sobic.007G190000 expressed protein -
6 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
7 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
8 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
9 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G201300 - -
11 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
12 Sobic.010G177400 dehydrogenase/reductase SDR family member 12, putative, expressed K11168: dehydrogenase/reductase SDR family member 12
13 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
14 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
15 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.001G481900 SAC domain containing protein, putative, expressed -
17 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
18 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
19 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
20 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase


Gene co-expression network
sample Sobic003G190400 Sobic003G190400 Sobic010G020800 Sobic010G020800 Sobic003G190400--Sobic010G020800 Sobic003G301900 Sobic003G301900 Sobic003G190400--Sobic003G301900 Sobic002G187700 Sobic002G187700 Sobic003G190400--Sobic002G187700 Sobic005G084500 Sobic005G084500 Sobic003G190400--Sobic005G084500 Sobic007G190000 Sobic007G190000 Sobic003G190400--Sobic007G190000 Sobic004G356700 Sobic004G356700 Sobic003G190400--Sobic004G356700 Sobic002G146300 Sobic002G146300 Sobic003G190400--Sobic002G146300 Sobic004G169000 Sobic004G169000 Sobic003G190400--Sobic004G169000 Sobic006G002300 Sobic006G002300 Sobic003G190400--Sobic006G002300 Sobic010G020800--Sobic003G190400 Sobic001G517800 Sobic001G517800 Sobic010G020800--Sobic001G517800 Sobic004G001500 Sobic004G001500 Sobic010G020800--Sobic004G001500 Sobic010G020800--Sobic007G190000 Sobic010G020800--Sobic002G146300 Sobic010G020800--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic010G020800--Sobic009G011600 Sobic001G446850 Sobic001G446850 Sobic010G020800--Sobic001G446850 Sobic006G240400 Sobic006G240400 Sobic010G020800--Sobic006G240400 Sobic003G301900--Sobic002G146300 Sobic003G301900--Sobic001G517800 Sobic010G139600 Sobic010G139600 Sobic003G301900--Sobic010G139600 Sobic003G301900--Sobic003G190400 Sobic005G149200 Sobic005G149200 Sobic003G301900--Sobic005G149200 Sobic003G320700 Sobic003G320700 Sobic003G301900--Sobic003G320700 Sobic006G219600 Sobic006G219600 Sobic003G301900--Sobic006G219600 Sobic006G087700 Sobic006G087700 Sobic003G301900--Sobic006G087700 Sobic003G301900--Sobic007G190000 Sobic001G481900 Sobic001G481900 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic008G059100 Sobic008G059100 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic002G187700--Sobic006G002300 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000 Sobic007G005400 Sobic007G005400 Sobic005G084500--Sobic007G005400 Sobic002G118200 Sobic002G118200 Sobic005G084500--Sobic002G118200 Sobic004G238200 Sobic004G238200 Sobic005G084500--Sobic004G238200 Sobic004G337400 Sobic004G337400 Sobic005G084500--Sobic004G337400 Sobic005G084500--Sobic006G219600 Sobic004G019800 Sobic004G019800 Sobic005G084500--Sobic004G019800 Sobic004G163800 Sobic004G163800 Sobic005G084500--Sobic004G163800 Sobic001G530900 Sobic001G530900 Sobic005G084500--Sobic001G530900 Sobic001G516901 Sobic001G516901 Sobic005G084500--Sobic001G516901 Sobic010G074300 Sobic010G074300 Sobic007G190000--Sobic010G074300 Sobic004G179300 Sobic004G179300 Sobic007G190000--Sobic004G179300 Sobic003G372500 Sobic003G372500 Sobic007G190000--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic007G190000--Sobic010G227100 Sobic007G190000--Sobic002G146300 Sobic007G190000--Sobic010G020800 Sobic009G074400 Sobic009G074400 Sobic007G190000--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic007G190000--Sobic010G147100 Sobic004G189200 Sobic004G189200 Sobic007G190000--Sobic004G189200 Sobic008G001200 Sobic008G001200 Sobic004G356700--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic004G356700--Sobic001G194200 Sobic004G356700--Sobic002G146300 Sobic004G356700--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic004G356700--Sobic009G256400 Sobic004G244900 Sobic004G244900 Sobic004G356700--Sobic004G244900 Sobic003G155100 Sobic003G155100 Sobic004G356700--Sobic003G155100 Sobic004G356700--Sobic006G219600 Sobic004G334300 Sobic004G334300 Sobic004G356700--Sobic004G334300 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic002G146300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic001G352400 Sobic001G352400 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic001G333800 Sobic001G333800 Sobic004G169000--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic006G175800 Sobic006G175800 Sobic004G169000--Sobic006G175800 Sobic003G229300 Sobic003G229300 Sobic004G169000--Sobic003G229300 Sobic004G042200 Sobic004G042200 Sobic004G169000--Sobic004G042200 Sobic005G106600 Sobic005G106600 Sobic004G169000--Sobic005G106600 Sobic006G002300--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic006G002300--Sobic001G381600 Sobic006G002300--Sobic002G187700 Sobic006G002300--Sobic003G115900 Sobic002G128200 Sobic002G128200 Sobic006G002300--Sobic002G128200 Sobic007G198300 Sobic007G198300 Sobic006G002300--Sobic007G198300 Sobic006G002300--Sobic003G301900 Sobic006G002300--Sobic003G229300 Sobic001G375100 Sobic001G375100 Sobic006G002300--Sobic001G375100
Octagon: transcription factors


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