Gene annotation
Transcriptome id Sobic.006G002300.1
Synonym Sb06g000400
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6PJE9
Pfam PF04578 PF13968
Panther DB PTHR31325 PTHR31325:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45480 : Protein of unknown function (DUF594)
RAP-DB (Rice) LOC_Os10g11310.2 : expressed protein
MaizeGDB (Corn) Zm00025a055517 , Zm00025a012182
Brachypodium -
Barley -
Wheat TraesCS2D02G121800
Populus -


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cDNA sequences
Sobic.006G002300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
2 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
3 Sobic.002G187700 expressed protein -
4 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
5 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
6 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
7 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
8 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
9 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
10 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
11 Sobic.007G190000 expressed protein -
12 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
13 Sobic.008G151100 protein kinase domain containing protein, expressed -
14 Sobic.002G346200 expressed protein -
15 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
16 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
17 Sobic.003G372500 DUF803 domain containing, putative, expressed -
18 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
19 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
20 Sobic.006G087700 T-complex protein 11, putative, expressed -


Gene co-expression network
sample Sobic006G002300 Sobic006G002300 Sobic003G198800 Sobic003G198800 Sobic006G002300--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic006G002300--Sobic001G381600 Sobic002G187700 Sobic002G187700 Sobic006G002300--Sobic002G187700 Sobic003G115900 Sobic003G115900 Sobic006G002300--Sobic003G115900 Sobic002G128200 Sobic002G128200 Sobic006G002300--Sobic002G128200 Sobic007G198300 Sobic007G198300 Sobic006G002300--Sobic007G198300 Sobic003G301900 Sobic003G301900 Sobic006G002300--Sobic003G301900 Sobic003G229300 Sobic003G229300 Sobic006G002300--Sobic003G229300 Sobic001G375100 Sobic001G375100 Sobic006G002300--Sobic001G375100 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic001G128300 Sobic001G128300 Sobic003G198800--Sobic001G128300 Sobic001G481900 Sobic001G481900 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic001G381600--Sobic008G151100 Sobic009G201300 Sobic009G201300 Sobic001G381600--Sobic009G201300 Sobic001G381600--Sobic007G198300 Sobic001G381600--Sobic006G002300 Sobic001G381600--Sobic003G115900 Sobic001G212300 Sobic001G212300 Sobic001G381600--Sobic001G212300 Sobic009G038900 Sobic009G038900 Sobic001G381600--Sobic009G038900 Sobic001G381600--Sobic003G198800 Sobic001G381600--Sobic003G155100 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic008G059100 Sobic008G059100 Sobic002G187700--Sobic008G059100 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic002G187700--Sobic003G115900 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic003G115900--Sobic002G187700 Sobic003G115900--Sobic003G198800 Sobic003G115900--Sobic001G381600 Sobic003G115900--Sobic006G002300 Sobic004G091100 Sobic004G091100 Sobic003G115900--Sobic004G091100 Sobic003G115900--Sobic009G074400 Sobic003G115900--Sobic001G481900 Sobic001G107600 Sobic001G107600 Sobic003G115900--Sobic001G107600 Sobic010G139600 Sobic010G139600 Sobic003G115900--Sobic010G139600 Sobic005G149700 Sobic005G149700 Sobic002G128200--Sobic005G149700 Sobic006G104600 Sobic006G104600 Sobic002G128200--Sobic006G104600 Sobic002G128200--Sobic006G002300 Sobic006G087700 Sobic006G087700 Sobic002G128200--Sobic006G087700 Sobic004G179300 Sobic004G179300 Sobic002G128200--Sobic004G179300 Sobic002G128200--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic002G128200--Sobic009G011600 Sobic001G517800 Sobic001G517800 Sobic002G128200--Sobic001G517800 Sobic002G128200--Sobic001G375100 Sobic007G198300--Sobic001G375100 Sobic007G198300--Sobic003G155100 Sobic008G130100 Sobic008G130100 Sobic007G198300--Sobic008G130100 Sobic003G191700 Sobic003G191700 Sobic007G198300--Sobic003G191700 Sobic007G198300--Sobic009G038900 Sobic007G198300--Sobic003G229300 Sobic006G219600 Sobic006G219600 Sobic007G198300--Sobic006G219600 Sobic006G133900 Sobic006G133900 Sobic007G198300--Sobic006G133900 Sobic007G198300--Sobic001G381600 Sobic002G146300 Sobic002G146300 Sobic003G301900--Sobic002G146300 Sobic003G301900--Sobic001G517800 Sobic003G301900--Sobic010G139600 Sobic003G301900--Sobic003G190400 Sobic005G149200 Sobic005G149200 Sobic003G301900--Sobic005G149200 Sobic003G320700 Sobic003G320700 Sobic003G301900--Sobic003G320700 Sobic003G301900--Sobic006G219600 Sobic003G301900--Sobic006G087700 Sobic007G190000 Sobic007G190000 Sobic003G301900--Sobic007G190000 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic001G375100--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G375100--Sobic008G001200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000
Octagon: transcription factors


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