Gene annotation
Transcriptome id Sobic.004G179300.1
Synonym CLC-C, Sb04g022890, ATCLC-C
Functional annotation chloride channel protein, putative, expressed
UniProt A0A1Z5RNU9
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF88
NCBI CDD -
KEGG Orthology K05016; chloride channel 7
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT5G49890 : chloride channel C
RAP-DB (Rice) LOC_Os02g35190.1 : chloride channel protein, putative, expressed
MaizeGDB (Corn) Zm00025a020717
Brachypodium KQJ99905 , KQJ99904 , KQJ82844 , KQJ82845 , KQJ82843
Barley HORVU2Hr1G077080.6 , HORVU2Hr1G077080.7 , HORVU2Hr1G077080.4 , HORVU2Hr1G077080.5 , HORVU2Hr1G077080.3 , HORVU2Hr1G077080.1 , HORVU2Hr1G077080.8 , HORVU2Hr1G077080.9 , HORVU2Hr1G077080.2 , HORVU2Hr1G077080.10 , HORVU2Hr1G077080.11
Wheat TraesCS2A02G309900 , TraesCS3D02G126700 , TraesCS3B02G144700 , TraesCS2B02G326900 , TraesCS2D02G308100 , TraesCS3D02G126600 , TraesCS3A02G125300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G386100 expressed protein -
2 Sobic.007G190000 expressed protein -
3 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
4 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G187700 expressed protein -
7 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
9 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
10 Sobic.010G074300 smr domain containing protein, expressed -
11 Sobic.010G196500 zinc-binding protein, putative, expressed -
12 Sobic.003G372500 DUF803 domain containing, putative, expressed -
13 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
14 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
16 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
18 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
19 Sobic.010G272800 OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed K03798: ftsH, cell division protease FtsH
20 Sobic.003G301500 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K17623: PUDP, pseudouridine 5'-phosphatase


Gene co-expression network
sample Sobic004G179300 Sobic004G179300 Sobic002G386100 Sobic002G386100 Sobic004G179300--Sobic002G386100 Sobic007G190000 Sobic007G190000 Sobic004G179300--Sobic007G190000 Sobic002G128200 Sobic002G128200 Sobic004G179300--Sobic002G128200 Sobic004G189200 Sobic004G189200 Sobic004G179300--Sobic004G189200 Sobic006G002300 Sobic006G002300 Sobic004G179300--Sobic006G002300 Sobic002G187700 Sobic002G187700 Sobic004G179300--Sobic002G187700 Sobic001G476700 Sobic001G476700 Sobic004G179300--Sobic001G476700 Sobic003G301900 Sobic003G301900 Sobic004G179300--Sobic003G301900 Sobic010G020800 Sobic010G020800 Sobic004G179300--Sobic010G020800 Sobic002G386100--Sobic004G179300 Sobic004G118200 Sobic004G118200 Sobic002G386100--Sobic004G118200 Sobic010G196500 Sobic010G196500 Sobic002G386100--Sobic010G196500 Sobic002G386100--Sobic001G476700 Sobic002G386100--Sobic002G187700 Sobic002G386100--Sobic007G190000 Sobic003G372500 Sobic003G372500 Sobic002G386100--Sobic003G372500 Sobic002G386100--Sobic002G128200 Sobic001G488700 Sobic001G488700 Sobic002G386100--Sobic001G488700 Sobic010G074300 Sobic010G074300 Sobic007G190000--Sobic010G074300 Sobic007G190000--Sobic004G179300 Sobic007G190000--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic007G190000--Sobic010G227100 Sobic002G146300 Sobic002G146300 Sobic007G190000--Sobic002G146300 Sobic007G190000--Sobic010G020800 Sobic009G074400 Sobic009G074400 Sobic007G190000--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic007G190000--Sobic010G147100 Sobic007G190000--Sobic004G189200 Sobic005G149700 Sobic005G149700 Sobic002G128200--Sobic005G149700 Sobic006G104600 Sobic006G104600 Sobic002G128200--Sobic006G104600 Sobic002G128200--Sobic006G002300 Sobic006G087700 Sobic006G087700 Sobic002G128200--Sobic006G087700 Sobic002G128200--Sobic004G179300 Sobic002G128200--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic002G128200--Sobic009G011600 Sobic001G517800 Sobic001G517800 Sobic002G128200--Sobic001G517800 Sobic001G375100 Sobic001G375100 Sobic002G128200--Sobic001G375100 Sobic006G257800 Sobic006G257800 Sobic004G189200--Sobic006G257800 Sobic001G062300 Sobic001G062300 Sobic004G189200--Sobic001G062300 Sobic006G051800 Sobic006G051800 Sobic004G189200--Sobic006G051800 Sobic008G167600 Sobic008G167600 Sobic004G189200--Sobic008G167600 Sobic004G189200--Sobic007G190000 Sobic004G231900 Sobic004G231900 Sobic004G189200--Sobic004G231900 Sobic003G301500 Sobic003G301500 Sobic004G189200--Sobic003G301500 Sobic002G383600 Sobic002G383600 Sobic004G189200--Sobic002G383600 Sobic004G189200--Sobic004G179300 Sobic003G198800 Sobic003G198800 Sobic006G002300--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic006G002300--Sobic001G381600 Sobic006G002300--Sobic002G187700 Sobic003G115900 Sobic003G115900 Sobic006G002300--Sobic003G115900 Sobic006G002300--Sobic002G128200 Sobic007G198300 Sobic007G198300 Sobic006G002300--Sobic007G198300 Sobic006G002300--Sobic003G301900 Sobic003G229300 Sobic003G229300 Sobic006G002300--Sobic003G229300 Sobic006G002300--Sobic001G375100 Sobic001G481900 Sobic001G481900 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic008G059100 Sobic008G059100 Sobic002G187700--Sobic008G059100 Sobic002G187700--Sobic003G198800 Sobic002G187700--Sobic001G488700 Sobic002G187700--Sobic003G115900 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic007G160700 Sobic007G160700 Sobic001G476700--Sobic007G160700 Sobic004G103000 Sobic004G103000 Sobic001G476700--Sobic004G103000 Sobic001G476700--Sobic004G169000 Sobic001G476700--Sobic004G118200 Sobic001G476700--Sobic003G229300 Sobic001G476700--Sobic007G190000 Sobic001G476700--Sobic010G074300 Sobic001G476700--Sobic002G386100 Sobic001G476700--Sobic004G179300 Sobic003G301900--Sobic002G146300 Sobic003G301900--Sobic001G517800 Sobic010G139600 Sobic010G139600 Sobic003G301900--Sobic010G139600 Sobic003G301900--Sobic003G190400 Sobic005G149200 Sobic005G149200 Sobic003G301900--Sobic005G149200 Sobic003G320700 Sobic003G320700 Sobic003G301900--Sobic003G320700 Sobic006G219600 Sobic006G219600 Sobic003G301900--Sobic006G219600 Sobic003G301900--Sobic006G087700 Sobic003G301900--Sobic007G190000 Sobic010G020800--Sobic003G190400 Sobic010G020800--Sobic001G517800 Sobic004G001500 Sobic004G001500 Sobic010G020800--Sobic004G001500 Sobic010G020800--Sobic007G190000 Sobic010G020800--Sobic002G146300 Sobic010G020800--Sobic003G301900 Sobic010G020800--Sobic009G011600 Sobic001G446850 Sobic001G446850 Sobic010G020800--Sobic001G446850 Sobic006G240400 Sobic006G240400 Sobic010G020800--Sobic006G240400
Octagon: transcription factors


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