Gene annotation
Transcriptome id Sobic.010G196500.3,Sobic.010G196500.4
Synonym
Functional annotation zinc-binding protein, putative, expressed
UniProt A0A1W0VTW8 , A0A194YK90
Pfam PF04640
Panther DB PTHR31065 PTHR31065:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21000 : PLATZ transcription factor family protein
RAP-DB (Rice) LOC_Os06g41930.2,LOC_Os06g41930.1 : zinc-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a056724 , Zm00025a051497
Brachypodium KQK17614 , KQK17615 , KQK17616 , KQK17617 , KQJ99391 , PNT65210
Barley HORVU7Hr1G059900.10 , HORVU7Hr1G059900.11 , HORVU7Hr1G059900.12 , HORVU7Hr1G059900.13 , HORVU7Hr1G093120.8 , HORVU7Hr1G093120.9 , HORVU7Hr1G093120.6 , HORVU7Hr1G093120.7 , HORVU7Hr1G093120.4 , HORVU7Hr1G093120.5 , HORVU7Hr1G093120.2 , HORVU7Hr1G093120.3 , HORVU7Hr1G093120.1 , HORVU6Hr1G067060.1 , HORVU6Hr1G067060.3 , HORVU6Hr1G067060.2 , HORVU6Hr1G067060.5 , HORVU6Hr1G067060.4 , HORVU6Hr1G067060.7 , HORVU7Hr1G093120.10 , HORVU7Hr1G059900.8 , HORVU7Hr1G059900.9 , HORVU7Hr1G059900.4 , HORVU7Hr1G059900.2 , HORVU7Hr1G059900.3 , HORVU7Hr1G059900.1
Wheat TraesCS7B02G296800 , TraesCS7A02G394800 , TraesCS6B02G291400 , TraesCS6D02G250500 , TraesCS7D02G390300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G196500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
2 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
3 Sobic.003G086900 C2 domain containing protein, putative, expressed -
4 Sobic.002G193100 expressed protein -
5 Sobic.007G084300 kelch repeat protein, putative, expressed -
6 Sobic.002G386100 expressed protein -
7 Sobic.008G146900 "similar to Leucine Rich Repeat family protein, expressed"(PubMedID : 29862293)@disease resistance protein, putative, expressed -
8 Sobic.001G381200 vacuolar-sorting receptor precursor, putative, expressed -
9 Sobic.002G187700 expressed protein -
10 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
11 Sobic.006G213500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
12 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
14 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
15 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
16 Sobic.006G133900 NIN, putative, expressed -
17 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
18 Sobic.004G181600 calmodulin binding protein, putative, expressed -
19 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
20 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -


Gene co-expression network
sample Sobic010G196500 Sobic010G196500 Sobic001G488700 Sobic001G488700 Sobic010G196500--Sobic001G488700 Sobic001G500800 Sobic001G500800 Sobic010G196500--Sobic001G500800 Sobic003G086900 Sobic003G086900 Sobic010G196500--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic010G196500--Sobic002G193100 Sobic007G084300 Sobic007G084300 Sobic010G196500--Sobic007G084300 Sobic002G386100 Sobic002G386100 Sobic010G196500--Sobic002G386100 Sobic008G146900 Sobic008G146900 Sobic010G196500--Sobic008G146900 Sobic001G381200 Sobic001G381200 Sobic010G196500--Sobic001G381200 Sobic002G187700 Sobic002G187700 Sobic010G196500--Sobic002G187700 Sobic008G059100 Sobic008G059100 Sobic001G488700--Sobic008G059100 Sobic001G488700--Sobic001G500800 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic004G233200 Sobic004G233200 Sobic001G488700--Sobic004G233200 Sobic006G175800 Sobic006G175800 Sobic001G488700--Sobic006G175800 Sobic003G302800 Sobic003G302800 Sobic001G488700--Sobic003G302800 Sobic001G481900 Sobic001G481900 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic001G500800--Sobic001G488700 Sobic001G500800--Sobic010G196500 Sobic001G500800--Sobic001G381200 Sobic006G213500 Sobic006G213500 Sobic001G500800--Sobic006G213500 Sobic002G001000 Sobic002G001000 Sobic001G500800--Sobic002G001000 Sobic001G500800--Sobic002G187700 Sobic003G403500 Sobic003G403500 Sobic001G500800--Sobic003G403500 Sobic001G500800--Sobic003G302800 Sobic001G500800--Sobic006G175800 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic004G026500 Sobic004G026500 Sobic002G193100--Sobic004G026500 Sobic002G193100--Sobic010G196500 Sobic007G227700 Sobic007G227700 Sobic002G193100--Sobic007G227700 Sobic007G169300 Sobic007G169300 Sobic002G193100--Sobic007G169300 Sobic002G276100 Sobic002G276100 Sobic002G193100--Sobic002G276100 Sobic006G065600 Sobic006G065600 Sobic002G193100--Sobic006G065600 Sobic003G343500 Sobic003G343500 Sobic002G193100--Sobic003G343500 Sobic001G219700 Sobic001G219700 Sobic002G193100--Sobic001G219700 Sobic002G345700 Sobic002G345700 Sobic002G193100--Sobic002G345700 Sobic006G030600 Sobic006G030600 Sobic007G084300--Sobic006G030600 Sobic006G143000 Sobic006G143000 Sobic007G084300--Sobic006G143000 Sobic007G084300--Sobic010G196500 Sobic004G034600 Sobic004G034600 Sobic007G084300--Sobic004G034600 Sobic002G373100 Sobic002G373100 Sobic007G084300--Sobic002G373100 Sobic007G084300--Sobic003G086900 Sobic009G016600 Sobic009G016600 Sobic007G084300--Sobic009G016600 Sobic002G249300 Sobic002G249300 Sobic007G084300--Sobic002G249300 Sobic007G084300--Sobic002G193100 Sobic004G179300 Sobic004G179300 Sobic002G386100--Sobic004G179300 Sobic004G118200 Sobic004G118200 Sobic002G386100--Sobic004G118200 Sobic002G386100--Sobic010G196500 Sobic001G476700 Sobic001G476700 Sobic002G386100--Sobic001G476700 Sobic002G386100--Sobic002G187700 Sobic007G190000 Sobic007G190000 Sobic002G386100--Sobic007G190000 Sobic003G372500 Sobic003G372500 Sobic002G386100--Sobic003G372500 Sobic002G128200 Sobic002G128200 Sobic002G386100--Sobic002G128200 Sobic002G386100--Sobic001G488700 Sobic010G184600 Sobic010G184600 Sobic008G146900--Sobic010G184600 Sobic008G146900--Sobic002G276100 Sobic001G159400 Sobic001G159400 Sobic008G146900--Sobic001G159400 Sobic008G146900--Sobic010G196500 Sobic004G181700 Sobic004G181700 Sobic008G146900--Sobic004G181700 Sobic008G144800 Sobic008G144800 Sobic008G146900--Sobic008G144800 Sobic004G189900 Sobic004G189900 Sobic008G146900--Sobic004G189900 Sobic008G146900--Sobic002G193100 Sobic003G014300 Sobic003G014300 Sobic008G146900--Sobic003G014300 Sobic003G229300 Sobic003G229300 Sobic001G381200--Sobic003G229300 Sobic001G381200--Sobic010G196500 Sobic001G381200--Sobic003G343500 Sobic001G381200--Sobic002G193100 Sobic001G381200--Sobic001G500800 Sobic001G381200--Sobic003G086900 Sobic004G169000 Sobic004G169000 Sobic001G381200--Sobic004G169000 Sobic001G381200--Sobic001G476700 Sobic001G381200--Sobic004G118200 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.