Gene annotation
Transcriptome id Sobic.003G343500.1
Synonym NDA2, Sb03g038750
Functional annotation NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
UniProt C5XNZ0
Pfam PF00070
Panther DB PTHR22912
NCBI CDD -
KEGG Orthology K17871; NADH:ubiquinone reductase (non-electrogenic)
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT2G29990 : alternative NAD(P)H dehydrogenase 2
RAP-DB (Rice) LOC_Os01g61410.1 : NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a048404 , Zm00025a039730
Brachypodium KQK10409
Barley HORVU0Hr1G000930.2 , HORVU0Hr1G000930.3 , HORVU3Hr1G087850.10 , HORVU7Hr1G076330.2 , HORVU7Hr1G076330.1 , HORVU2Hr1G101830.1 , HORVU2Hr1G101830.2 , HORVU5Hr1G020920.2 , HORVU5Hr1G020920.3 , HORVU5Hr1G020920.1 , HORVU5Hr1G020920.4 , HORVU5Hr1G056500.3 , HORVU5Hr1G056500.4 , HORVU3Hr1G087850.3 , HORVU3Hr1G087850.2 , HORVU3Hr1G087850.1 , HORVU3Hr1G087850.7 , HORVU3Hr1G087850.6 , HORVU3Hr1G087850.5 , HORVU3Hr1G087850.4 , HORVU3Hr1G087850.9 , HORVU3Hr1G087850.8 , HORVU3Hr1G087950.2 , HORVU3Hr1G087950.3 , HORVU3Hr1G087950.4 , HORVU7Hr1G040660.3 , HORVU7Hr1G040660.2 , HORVU7Hr1G040660.4 , HORVU2Hr1G022740.3 , HORVU2Hr1G022740.2
Wheat TraesCS3D02G343900 , TraesCS3B02G382500 , TraesCS3A02G349900
Populus PNT19594 , PNT19595


JBrowse

Open New Page


cDNA sequences
Sobic.003G343500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512500 expressed protein -
2 Sobic.006G133900 NIN, putative, expressed -
3 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
4 Sobic.006G065600 expressed protein -
5 Sobic.007G167100 expressed protein K19373: DnaJ homolog subfamily C member 28
6 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -
7 Sobic.002G193100 expressed protein -
8 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G058200 sulfiredoxin-1, putative, expressed K12260: sulfiredoxin
10 Sobic.001G381200 vacuolar-sorting receptor precursor, putative, expressed -
11 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.003G110800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
13 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
14 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G390500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pyruvate dehydrogenase kinase(PubMedID : 27016024)@kinase, putative, expressed K00898: pyruvate dehydrogenase kinase 2/3/4
16 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
17 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
18 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
19 Sobic.001G418700 SLT1 protein, putative, expressed -
20 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase


Gene co-expression network
sample Sobic003G343500 Sobic003G343500 Sobic001G512500 Sobic001G512500 Sobic003G343500--Sobic001G512500 Sobic006G133900 Sobic006G133900 Sobic003G343500--Sobic006G133900 Sobic001G065600 Sobic001G065600 Sobic003G343500--Sobic001G065600 Sobic006G065600 Sobic006G065600 Sobic003G343500--Sobic006G065600 Sobic007G167100 Sobic007G167100 Sobic003G343500--Sobic007G167100 Sobic003G370700 Sobic003G370700 Sobic003G343500--Sobic003G370700 Sobic002G193100 Sobic002G193100 Sobic003G343500--Sobic002G193100 Sobic010G176200 Sobic010G176200 Sobic003G343500--Sobic010G176200 Sobic010G058200 Sobic010G058200 Sobic003G343500--Sobic010G058200 Sobic004G054400 Sobic004G054400 Sobic001G512500--Sobic004G054400 Sobic001G032700 Sobic001G032700 Sobic001G512500--Sobic001G032700 Sobic001G124800 Sobic001G124800 Sobic001G512500--Sobic001G124800 Sobic003G014300 Sobic003G014300 Sobic001G512500--Sobic003G014300 Sobic004G298900 Sobic004G298900 Sobic001G512500--Sobic004G298900 Sobic001G512500--Sobic003G343500 Sobic001G512500--Sobic010G058200 Sobic004G026500 Sobic004G026500 Sobic001G512500--Sobic004G026500 Sobic003G037300 Sobic003G037300 Sobic001G512500--Sobic003G037300 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic003G155100 Sobic003G155100 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic001G158900 Sobic001G158900 Sobic001G065600--Sobic001G158900 Sobic001G073900 Sobic001G073900 Sobic001G065600--Sobic001G073900 Sobic005G188600 Sobic005G188600 Sobic001G065600--Sobic005G188600 Sobic006G010900 Sobic006G010900 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic002G036000 Sobic002G036000 Sobic001G065600--Sobic002G036000 Sobic001G003200 Sobic001G003200 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600 Sobic006G065600--Sobic004G181600 Sobic006G065600--Sobic007G167100 Sobic006G065600--Sobic006G133900 Sobic006G065600--Sobic002G104100 Sobic006G065600--Sobic008G130100 Sobic006G065600--Sobic001G454500 Sobic007G193700 Sobic007G193700 Sobic006G065600--Sobic007G193700 Sobic004G178500 Sobic004G178500 Sobic006G065600--Sobic004G178500 Sobic001G365900 Sobic001G365900 Sobic006G065600--Sobic001G365900 Sobic007G167100--Sobic006G065600 Sobic007G167100--Sobic004G181600 Sobic010G002700 Sobic010G002700 Sobic007G167100--Sobic010G002700 Sobic007G167100--Sobic006G133900 Sobic005G179300 Sobic005G179300 Sobic007G167100--Sobic005G179300 Sobic001G169900 Sobic001G169900 Sobic007G167100--Sobic001G169900 Sobic006G212800 Sobic006G212800 Sobic007G167100--Sobic006G212800 Sobic004G042200 Sobic004G042200 Sobic007G167100--Sobic004G042200 Sobic007G167100--Sobic003G343500 Sobic003G370700--Sobic006G133900 Sobic001G333800 Sobic001G333800 Sobic003G370700--Sobic001G333800 Sobic003G370700--Sobic002G104100 Sobic003G370700--Sobic004G181600 Sobic003G229300 Sobic003G229300 Sobic003G370700--Sobic003G229300 Sobic003G370700--Sobic003G191700 Sobic009G038900 Sobic009G038900 Sobic003G370700--Sobic009G038900 Sobic005G106600 Sobic005G106600 Sobic003G370700--Sobic005G106600 Sobic007G198300 Sobic007G198300 Sobic003G370700--Sobic007G198300 Sobic002G193100--Sobic004G026500 Sobic010G196500 Sobic010G196500 Sobic002G193100--Sobic010G196500 Sobic007G227700 Sobic007G227700 Sobic002G193100--Sobic007G227700 Sobic007G169300 Sobic007G169300 Sobic002G193100--Sobic007G169300 Sobic002G276100 Sobic002G276100 Sobic002G193100--Sobic002G276100 Sobic002G193100--Sobic006G065600 Sobic002G193100--Sobic003G343500 Sobic001G219700 Sobic001G219700 Sobic002G193100--Sobic001G219700 Sobic002G345700 Sobic002G345700 Sobic002G193100--Sobic002G345700 Sobic008G130000 Sobic008G130000 Sobic010G176200--Sobic008G130000 Sobic003G313300 Sobic003G313300 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic004G356400 Sobic004G356400 Sobic010G176200--Sobic004G356400 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic001G017300 Sobic001G017300 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic010G176200--Sobic001G333800 Sobic001G286600 Sobic001G286600 Sobic010G058200--Sobic001G286600 Sobic006G188000 Sobic006G188000 Sobic010G058200--Sobic006G188000 Sobic004G154400 Sobic004G154400 Sobic010G058200--Sobic004G154400 Sobic002G102200 Sobic002G102200 Sobic010G058200--Sobic002G102200 Sobic009G062400 Sobic009G062400 Sobic010G058200--Sobic009G062400 Sobic010G269400 Sobic010G269400 Sobic010G058200--Sobic010G269400 Sobic010G140600 Sobic010G140600 Sobic010G058200--Sobic010G140600 Sobic006G102000 Sobic006G102000 Sobic010G058200--Sobic006G102000 Sobic002G136100 Sobic002G136100 Sobic010G058200--Sobic002G136100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.