Gene annotation
Transcriptome id Sobic.002G390500.1,Sobic.002G390500.2
Synonym PDK, ATPDHK,PDK, Sb02g040610
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pyruvate dehydrogenase kinase (PubMedID : 27016024)
kinase, putative, expressed
UniProt C5X3B4
Pfam PF02518 PF10436
Panther DB PTHR11947 PTHR11947:SF24
NCBI CDD KOG0787; Dehydrogenase kinase
KEGG Orthology K00898; pyruvate dehydrogenase kinase 2/3/4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06483 : pyruvate dehydrogenase kinase
RAP-DB (Rice) LOC_Os07g44330.2 : kinase, putative, expressed
MaizeGDB (Corn) Zm00025a002628 , Zm00025a048916 , Zm00025a052309
Brachypodium KQK15010 , KQK21554 , KQK21552 , KQK21553
Barley HORVU2Hr1G027040.3 , HORVU2Hr1G027040.2 , HORVU2Hr1G027040.1 , HORVU2Hr1G027040.5 , HORVU2Hr1G027040.4
Wheat TraesCS4D02G179300 , TraesCS4D02G179300 , TraesCS2B02G175300 , TraesCS4B02G177700 , TraesCS2D02G155200
Populus -


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cDNA sequences
Sobic.002G390500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G412100 flowering promoting factor-like 1, putative, expressed -
2 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
3 Sobic.005G179300 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
5 Sobic.001G333800 MYB family transcription factor, putative, expressed -
6 Sobic.010G181100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD binding domain containing protein, expressed -
7 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
8 Sobic.003G080700 Ser/Thr protein kinase, putative, expressed -
9 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
10 Sobic.001G413000 ABC transporter family protein, putative, expressed -
11 Sobic.009G207900 expressed protein -
12 Sobic.003G203300 stress regulated protein, putative, expressed -
13 Sobic.003G166200 expressed protein -
14 Sobic.010G058200 sulfiredoxin-1, putative, expressed K12260: sulfiredoxin
15 Sobic.003G416000 - -
16 Sobic.001G359300 cytochrome P450, putative, expressed -
17 Sobic.008G052900 CBS domain-containing protein, putative, expressed -
18 Sobic.009G038701 - -
19 Sobic.002G136100 genetic modifier, putative, expressed -
20 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -


Gene co-expression network
sample Sobic002G390500 Sobic002G390500 Sobic002G412100 Sobic002G412100 Sobic002G390500--Sobic002G412100 Sobic009G219100 Sobic009G219100 Sobic002G390500--Sobic009G219100 Sobic005G179300 Sobic005G179300 Sobic002G390500--Sobic005G179300 Sobic003G343500 Sobic003G343500 Sobic002G390500--Sobic003G343500 Sobic001G333800 Sobic001G333800 Sobic002G390500--Sobic001G333800 Sobic010G181100 Sobic010G181100 Sobic002G390500--Sobic010G181100 Sobic006G259600 Sobic006G259600 Sobic002G390500--Sobic006G259600 Sobic003G080700 Sobic003G080700 Sobic002G390500--Sobic003G080700 Sobic001G003200 Sobic001G003200 Sobic002G390500--Sobic001G003200 Sobic002G412100--Sobic002G390500 Sobic010G135600 Sobic010G135600 Sobic002G412100--Sobic010G135600 Sobic002G136100 Sobic002G136100 Sobic002G412100--Sobic002G136100 Sobic002G412100--Sobic003G343500 Sobic002G412100--Sobic001G333800 Sobic001G283100 Sobic001G283100 Sobic002G412100--Sobic001G283100 Sobic002G412100--Sobic006G259600 Sobic010G099700 Sobic010G099700 Sobic002G412100--Sobic010G099700 Sobic004G356400 Sobic004G356400 Sobic002G412100--Sobic004G356400 Sobic004G154400 Sobic004G154400 Sobic009G219100--Sobic004G154400 Sobic009G207900 Sobic009G207900 Sobic009G219100--Sobic009G207900 Sobic009G062400 Sobic009G062400 Sobic009G219100--Sobic009G062400 Sobic009G237000 Sobic009G237000 Sobic009G219100--Sobic009G237000 Sobic008G074000 Sobic008G074000 Sobic009G219100--Sobic008G074000 Sobic001G504400 Sobic001G504400 Sobic009G219100--Sobic001G504400 Sobic009G093100 Sobic009G093100 Sobic009G219100--Sobic009G093100 Sobic002G206300 Sobic002G206300 Sobic009G219100--Sobic002G206300 Sobic009G219100--Sobic005G179300 Sobic006G090100 Sobic006G090100 Sobic005G179300--Sobic006G090100 Sobic001G077300 Sobic001G077300 Sobic005G179300--Sobic001G077300 Sobic003G073800 Sobic003G073800 Sobic005G179300--Sobic003G073800 Sobic006G212800 Sobic006G212800 Sobic005G179300--Sobic006G212800 Sobic005G179300--Sobic009G207900 Sobic001G207800 Sobic001G207800 Sobic005G179300--Sobic001G207800 Sobic005G179300--Sobic009G219100 Sobic004G271600 Sobic004G271600 Sobic005G179300--Sobic004G271600 Sobic002G081400 Sobic002G081400 Sobic005G179300--Sobic002G081400 Sobic001G512500 Sobic001G512500 Sobic003G343500--Sobic001G512500 Sobic006G133900 Sobic006G133900 Sobic003G343500--Sobic006G133900 Sobic001G065600 Sobic001G065600 Sobic003G343500--Sobic001G065600 Sobic006G065600 Sobic006G065600 Sobic003G343500--Sobic006G065600 Sobic007G167100 Sobic007G167100 Sobic003G343500--Sobic007G167100 Sobic003G370700 Sobic003G370700 Sobic003G343500--Sobic003G370700 Sobic002G193100 Sobic002G193100 Sobic003G343500--Sobic002G193100 Sobic010G176200 Sobic010G176200 Sobic003G343500--Sobic010G176200 Sobic010G058200 Sobic010G058200 Sobic003G343500--Sobic010G058200 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic005G106600 Sobic005G106600 Sobic001G333800--Sobic005G106600 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic003G220100 Sobic003G220100 Sobic001G333800--Sobic003G220100 Sobic009G038900 Sobic009G038900 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G333800--Sobic001G077300 Sobic005G068700 Sobic005G068700 Sobic010G181100--Sobic005G068700 Sobic002G056500 Sobic002G056500 Sobic010G181100--Sobic002G056500 Sobic002G190300 Sobic002G190300 Sobic010G181100--Sobic002G190300 Sobic001G258200 Sobic001G258200 Sobic010G181100--Sobic001G258200 Sobic004G189800 Sobic004G189800 Sobic010G181100--Sobic004G189800 Sobic009G123900 Sobic009G123900 Sobic010G181100--Sobic009G123900 Sobic005G101200 Sobic005G101200 Sobic010G181100--Sobic005G101200 Sobic007G090403 Sobic007G090403 Sobic010G181100--Sobic007G090403 Sobic010G181100--Sobic009G219100 Sobic006G259600--Sobic006G090100 Sobic006G259600--Sobic001G207800 Sobic003G166200 Sobic003G166200 Sobic006G259600--Sobic003G166200 Sobic006G259600--Sobic002G081400 Sobic006G259600--Sobic006G212800 Sobic006G259600--Sobic009G073900 Sobic001G509200 Sobic001G509200 Sobic006G259600--Sobic001G509200 Sobic001G243200 Sobic001G243200 Sobic006G259600--Sobic001G243200 Sobic006G259600--Sobic001G077300 Sobic002G017500 Sobic002G017500 Sobic003G080700--Sobic002G017500 Sobic003G080700--Sobic005G179300 Sobic001G413000 Sobic001G413000 Sobic003G080700--Sobic001G413000 Sobic003G080700--Sobic001G243200 Sobic002G244200 Sobic002G244200 Sobic003G080700--Sobic002G244200 Sobic003G080700--Sobic002G390500 Sobic010G131700 Sobic010G131700 Sobic003G080700--Sobic010G131700 Sobic003G190100 Sobic003G190100 Sobic003G080700--Sobic003G190100 Sobic003G416000 Sobic003G416000 Sobic003G080700--Sobic003G416000 Sobic009G056700 Sobic009G056700 Sobic001G003200--Sobic009G056700 Sobic007G053800 Sobic007G053800 Sobic001G003200--Sobic007G053800 Sobic004G121400 Sobic004G121400 Sobic001G003200--Sobic004G121400 Sobic007G150100 Sobic007G150100 Sobic001G003200--Sobic007G150100 Sobic006G188000 Sobic006G188000 Sobic001G003200--Sobic006G188000 Sobic003G398800 Sobic003G398800 Sobic001G003200--Sobic003G398800 Sobic001G048400 Sobic001G048400 Sobic001G003200--Sobic001G048400 Sobic003G431700 Sobic003G431700 Sobic001G003200--Sobic003G431700 Sobic001G003200--Sobic001G504400
Octagon: transcription factors


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