Gene annotation
Transcriptome id Sobic.002G136100.2,Sobic.002G136100.1,Sobic.002G136100.3
Synonym Sb02g012310
Functional annotation genetic modifier, putative, expressed
UniProt A0A1B6QB22 , A0A1W0W3U3
Pfam PF13419
Panther DB PTHR18901 PTHR18901:SF4
NCBI CDD KOG2914; Predicted haloacid-halidohydrolase and related hydrolases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11570 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os09g39560.1 : genetic modifier, putative, expressed
MaizeGDB (Corn) Zm00025a013489
Brachypodium KQJ91601 , KQK02325 , PNT69811
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G154400 drought-induced protein 1, putative, expressed -
2 Sobic.006G212800 expressed protein -
3 Sobic.009G207900 expressed protein -
4 Sobic.010G058200 sulfiredoxin-1, putative, expressed K12260: sulfiredoxin
5 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
6 Sobic.003G328100 expressed protein -
7 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
8 Sobic.003G157900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycine-rich protein, putative, expressed -
9 Sobic.007G015500 no apical meristem protein, putative, expressed -
10 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
12 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
13 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
14 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
15 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
16 Sobic.007G090900 heat shock protein-related, putative, expressed -
17 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
18 Sobic.006G188000 expressed protein -
19 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
20 Sobic.001G500700 expressed protein -


Gene co-expression network
sample Sobic002G136100 Sobic002G136100 Sobic004G154400 Sobic004G154400 Sobic002G136100--Sobic004G154400 Sobic006G212800 Sobic006G212800 Sobic002G136100--Sobic006G212800 Sobic009G207900 Sobic009G207900 Sobic002G136100--Sobic009G207900 Sobic010G058200 Sobic010G058200 Sobic002G136100--Sobic010G058200 Sobic001G286600 Sobic001G286600 Sobic002G136100--Sobic001G286600 Sobic003G328100 Sobic003G328100 Sobic002G136100--Sobic003G328100 Sobic009G062400 Sobic009G062400 Sobic002G136100--Sobic009G062400 Sobic003G157900 Sobic003G157900 Sobic002G136100--Sobic003G157900 Sobic007G015500 Sobic007G015500 Sobic002G136100--Sobic007G015500 Sobic009G219100 Sobic009G219100 Sobic004G154400--Sobic009G219100 Sobic004G154400--Sobic001G286600 Sobic004G154400--Sobic009G062400 Sobic004G154400--Sobic010G058200 Sobic004G154400--Sobic002G136100 Sobic004G154400--Sobic009G207900 Sobic004G006400 Sobic004G006400 Sobic004G154400--Sobic004G006400 Sobic009G237000 Sobic009G237000 Sobic004G154400--Sobic009G237000 Sobic006G158700 Sobic006G158700 Sobic004G154400--Sobic006G158700 Sobic006G212800--Sobic009G207900 Sobic001G077300 Sobic001G077300 Sobic006G212800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic006G212800--Sobic001G180200 Sobic007G135800 Sobic007G135800 Sobic006G212800--Sobic007G135800 Sobic002G206300 Sobic002G206300 Sobic006G212800--Sobic002G206300 Sobic009G073900 Sobic009G073900 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic002G162400 Sobic002G162400 Sobic006G212800--Sobic002G162400 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic009G207900--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic009G207900--Sobic001G504400 Sobic009G207900--Sobic009G219100 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G207900--Sobic009G062400 Sobic010G058200--Sobic001G286600 Sobic006G188000 Sobic006G188000 Sobic010G058200--Sobic006G188000 Sobic010G058200--Sobic004G154400 Sobic002G102200 Sobic002G102200 Sobic010G058200--Sobic002G102200 Sobic010G058200--Sobic009G062400 Sobic010G269400 Sobic010G269400 Sobic010G058200--Sobic010G269400 Sobic010G140600 Sobic010G140600 Sobic010G058200--Sobic010G140600 Sobic006G102000 Sobic006G102000 Sobic010G058200--Sobic006G102000 Sobic010G058200--Sobic002G136100 Sobic001G286600--Sobic004G154400 Sobic001G286600--Sobic009G062400 Sobic001G286600--Sobic010G269400 Sobic001G286600--Sobic010G058200 Sobic001G118400 Sobic001G118400 Sobic001G286600--Sobic001G118400 Sobic001G286600--Sobic003G328100 Sobic006G155500 Sobic006G155500 Sobic001G286600--Sobic006G155500 Sobic006G110900 Sobic006G110900 Sobic001G286600--Sobic006G110900 Sobic003G070900 Sobic003G070900 Sobic001G286600--Sobic003G070900 Sobic007G169100 Sobic007G169100 Sobic003G328100--Sobic007G169100 Sobic003G328100--Sobic001G118400 Sobic003G328100--Sobic006G155500 Sobic006G140700 Sobic006G140700 Sobic003G328100--Sobic006G140700 Sobic007G107700 Sobic007G107700 Sobic003G328100--Sobic007G107700 Sobic003G328100--Sobic001G286600 Sobic010G231500 Sobic010G231500 Sobic003G328100--Sobic010G231500 Sobic004G281900 Sobic004G281900 Sobic003G328100--Sobic004G281900 Sobic006G097500 Sobic006G097500 Sobic003G328100--Sobic006G097500 Sobic008G006100 Sobic008G006100 Sobic009G062400--Sobic008G006100 Sobic002G112400 Sobic002G112400 Sobic009G062400--Sobic002G112400 Sobic009G062400--Sobic009G207900 Sobic009G062400--Sobic009G219100 Sobic003G037300 Sobic003G037300 Sobic009G062400--Sobic003G037300 Sobic009G062400--Sobic004G154400 Sobic009G062400--Sobic001G286600 Sobic003G345500 Sobic003G345500 Sobic009G062400--Sobic003G345500 Sobic003G284800 Sobic003G284800 Sobic009G062400--Sobic003G284800 Sobic007G090900 Sobic007G090900 Sobic003G157900--Sobic007G090900 Sobic003G157900--Sobic006G212800 Sobic003G380200 Sobic003G380200 Sobic003G157900--Sobic003G380200 Sobic009G103000 Sobic009G103000 Sobic003G157900--Sobic009G103000 Sobic003G157900--Sobic002G136100 Sobic002G275100 Sobic002G275100 Sobic003G157900--Sobic002G275100 Sobic004G267700 Sobic004G267700 Sobic003G157900--Sobic004G267700 Sobic003G157900--Sobic002G162400 Sobic006G213700 Sobic006G213700 Sobic003G157900--Sobic006G213700 Sobic007G015500--Sobic001G286600 Sobic001G423400 Sobic001G423400 Sobic007G015500--Sobic001G423400 Sobic007G015500--Sobic002G136100 Sobic007G015500--Sobic009G219100 Sobic007G015500--Sobic004G154400 Sobic007G015500--Sobic009G207900 Sobic002G258600 Sobic002G258600 Sobic007G015500--Sobic002G258600 Sobic007G015500--Sobic006G158700 Sobic007G015500--Sobic009G237000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.