Gene annotation
Transcriptome id Sobic.009G062400.1
Synonym Sb09g005200
Functional annotation uvrB/uvrC motif family protein, expressed
UniProt C5Z144
Pfam PF02151 PF04379
Panther DB PTHR14289 PTHR14289:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G06110 : SKP1/ASK-interacting protein 16
RAP-DB (Rice) LOC_Os05g07860.1 : uvrB/uvrC motif family protein, expressed
MaizeGDB (Corn) Zm00025a003221 , Zm00025a036865
Brachypodium KQK07280
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G006100 MATE efflux protein, putative, expressed -
2 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
3 Sobic.009G207900 expressed protein -
4 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
5 Sobic.003G037300 Twin LOV 1, putative, expressed -
6 Sobic.004G154400 drought-induced protein 1, putative, expressed -
7 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
8 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -
9 Sobic.003G284800 heat shock protein DnaJ, putative, expressed -
10 Sobic.006G158700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
11 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
12 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
13 Sobic.001G128600 -(PubMedID : 26465154)@DUF1517 domain containing protein, putative, expressed -
14 Sobic.010G058200 sulfiredoxin-1, putative, expressed K12260: sulfiredoxin
15 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
16 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
18 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
19 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
20 Sobic.004G298900 OR, putative, expressed -


Gene co-expression network
sample Sobic009G062400 Sobic009G062400 Sobic008G006100 Sobic008G006100 Sobic009G062400--Sobic008G006100 Sobic002G112400 Sobic002G112400 Sobic009G062400--Sobic002G112400 Sobic009G207900 Sobic009G207900 Sobic009G062400--Sobic009G207900 Sobic009G219100 Sobic009G219100 Sobic009G062400--Sobic009G219100 Sobic003G037300 Sobic003G037300 Sobic009G062400--Sobic003G037300 Sobic004G154400 Sobic004G154400 Sobic009G062400--Sobic004G154400 Sobic001G286600 Sobic001G286600 Sobic009G062400--Sobic001G286600 Sobic003G345500 Sobic003G345500 Sobic009G062400--Sobic003G345500 Sobic003G284800 Sobic003G284800 Sobic009G062400--Sobic003G284800 Sobic008G006100--Sobic002G112400 Sobic001G128600 Sobic001G128600 Sobic008G006100--Sobic001G128600 Sobic008G006100--Sobic009G062400 Sobic001G500600 Sobic001G500600 Sobic008G006100--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic008G006100--Sobic003G070900 Sobic009G237000 Sobic009G237000 Sobic008G006100--Sobic009G237000 Sobic001G134700 Sobic001G134700 Sobic008G006100--Sobic001G134700 Sobic003G233700 Sobic003G233700 Sobic008G006100--Sobic003G233700 Sobic007G103400 Sobic007G103400 Sobic008G006100--Sobic007G103400 Sobic002G112400--Sobic001G128600 Sobic002G112400--Sobic008G006100 Sobic003G160800 Sobic003G160800 Sobic002G112400--Sobic003G160800 Sobic002G112400--Sobic009G062400 Sobic006G265900 Sobic006G265900 Sobic002G112400--Sobic006G265900 Sobic001G122300 Sobic001G122300 Sobic002G112400--Sobic001G122300 Sobic009G056700 Sobic009G056700 Sobic002G112400--Sobic009G056700 Sobic002G112400--Sobic009G237000 Sobic003G387100 Sobic003G387100 Sobic002G112400--Sobic003G387100 Sobic006G212800 Sobic006G212800 Sobic009G207900--Sobic006G212800 Sobic001G180200 Sobic001G180200 Sobic009G207900--Sobic001G180200 Sobic002G206300 Sobic002G206300 Sobic009G207900--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic009G207900--Sobic001G504400 Sobic009G207900--Sobic009G219100 Sobic007G135800 Sobic007G135800 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G207900--Sobic009G062400 Sobic009G219100--Sobic004G154400 Sobic009G219100--Sobic009G207900 Sobic009G219100--Sobic009G062400 Sobic009G219100--Sobic009G237000 Sobic008G074000 Sobic008G074000 Sobic009G219100--Sobic008G074000 Sobic009G219100--Sobic001G504400 Sobic009G093100 Sobic009G093100 Sobic009G219100--Sobic009G093100 Sobic009G219100--Sobic002G206300 Sobic005G179300 Sobic005G179300 Sobic009G219100--Sobic005G179300 Sobic004G298900 Sobic004G298900 Sobic003G037300--Sobic004G298900 Sobic003G037300--Sobic009G062400 Sobic003G037300--Sobic008G006100 Sobic010G269400 Sobic010G269400 Sobic003G037300--Sobic010G269400 Sobic003G037300--Sobic009G207900 Sobic003G037300--Sobic004G154400 Sobic010G076800 Sobic010G076800 Sobic003G037300--Sobic010G076800 Sobic001G521200 Sobic001G521200 Sobic003G037300--Sobic001G521200 Sobic003G037300--Sobic001G286600 Sobic004G154400--Sobic009G219100 Sobic004G154400--Sobic001G286600 Sobic004G154400--Sobic009G062400 Sobic010G058200 Sobic010G058200 Sobic004G154400--Sobic010G058200 Sobic002G136100 Sobic002G136100 Sobic004G154400--Sobic002G136100 Sobic004G154400--Sobic009G207900 Sobic004G006400 Sobic004G006400 Sobic004G154400--Sobic004G006400 Sobic004G154400--Sobic009G237000 Sobic006G158700 Sobic006G158700 Sobic004G154400--Sobic006G158700 Sobic001G286600--Sobic004G154400 Sobic001G286600--Sobic009G062400 Sobic001G286600--Sobic010G269400 Sobic001G286600--Sobic010G058200 Sobic001G118400 Sobic001G118400 Sobic001G286600--Sobic001G118400 Sobic003G328100 Sobic003G328100 Sobic001G286600--Sobic003G328100 Sobic006G155500 Sobic006G155500 Sobic001G286600--Sobic006G155500 Sobic006G110900 Sobic006G110900 Sobic001G286600--Sobic006G110900 Sobic001G286600--Sobic003G070900 Sobic003G345500--Sobic009G062400 Sobic003G345500--Sobic001G504400 Sobic003G345500--Sobic008G006100 Sobic003G345500--Sobic009G207900 Sobic003G345500--Sobic007G103400 Sobic007G058001 Sobic007G058001 Sobic003G345500--Sobic007G058001 Sobic006G102000 Sobic006G102000 Sobic003G345500--Sobic006G102000 Sobic002G005600 Sobic002G005600 Sobic003G345500--Sobic002G005600 Sobic003G345500--Sobic009G237000 Sobic003G284800--Sobic002G112400 Sobic003G284800--Sobic009G062400 Sobic003G253300 Sobic003G253300 Sobic003G284800--Sobic003G253300 Sobic003G284800--Sobic006G265900 Sobic002G061900 Sobic002G061900 Sobic003G284800--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic003G284800--Sobic006G097500 Sobic007G053800 Sobic007G053800 Sobic003G284800--Sobic007G053800 Sobic003G284800--Sobic001G128600 Sobic003G284800--Sobic008G006100
Octagon: transcription factors


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