Gene annotation
Transcriptome id Sobic.006G158700.1
Synonym Sb06g023570
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
short-chain dehydrogenase/reductase, putative, expressed
UniProt C5YCW6
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF358
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G01800 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g44950.1 : short-chain dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) Zm00025a056581 , Zm00025a010449 , Zm00025a056579
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G158700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
2 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
3 Sobic.009G207900 expressed protein -
4 Sobic.004G154400 drought-induced protein 1, putative, expressed -
5 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
6 Sobic.003G403900 "domain confirmed by Pfam database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
7 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
8 Sobic.003G328100 expressed protein -
9 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
10 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
11 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
12 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
13 Sobic.007G169100 glutathione S-transferase, N-terminal domain containing protein, expressed -
14 Sobic.004G006400 cytochrome P450, putative, expressed -
15 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
16 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
17 Sobic.003G203000 high light inducible protein, putative, expressed -
18 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.001G317800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.007G107700 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic006G158700 Sobic006G158700 Sobic009G062400 Sobic009G062400 Sobic006G158700--Sobic009G062400 Sobic009G237000 Sobic009G237000 Sobic006G158700--Sobic009G237000 Sobic009G207900 Sobic009G207900 Sobic006G158700--Sobic009G207900 Sobic004G154400 Sobic004G154400 Sobic006G158700--Sobic004G154400 Sobic006G097500 Sobic006G097500 Sobic006G158700--Sobic006G097500 Sobic003G403900 Sobic003G403900 Sobic006G158700--Sobic003G403900 Sobic001G180200 Sobic001G180200 Sobic006G158700--Sobic001G180200 Sobic003G328100 Sobic003G328100 Sobic006G158700--Sobic003G328100 Sobic007G135800 Sobic007G135800 Sobic006G158700--Sobic007G135800 Sobic008G006100 Sobic008G006100 Sobic009G062400--Sobic008G006100 Sobic002G112400 Sobic002G112400 Sobic009G062400--Sobic002G112400 Sobic009G062400--Sobic009G207900 Sobic009G219100 Sobic009G219100 Sobic009G062400--Sobic009G219100 Sobic003G037300 Sobic003G037300 Sobic009G062400--Sobic003G037300 Sobic009G062400--Sobic004G154400 Sobic001G286600 Sobic001G286600 Sobic009G062400--Sobic001G286600 Sobic003G345500 Sobic003G345500 Sobic009G062400--Sobic003G345500 Sobic003G284800 Sobic003G284800 Sobic009G062400--Sobic003G284800 Sobic007G103400 Sobic007G103400 Sobic009G237000--Sobic007G103400 Sobic004G353100 Sobic004G353100 Sobic009G237000--Sobic004G353100 Sobic006G102000 Sobic006G102000 Sobic009G237000--Sobic006G102000 Sobic002G298800 Sobic002G298800 Sobic009G237000--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic009G237000--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic009G237000--Sobic001G504400 Sobic003G233700 Sobic003G233700 Sobic009G237000--Sobic003G233700 Sobic007G108900 Sobic007G108900 Sobic009G237000--Sobic007G108900 Sobic008G074000 Sobic008G074000 Sobic009G237000--Sobic008G074000 Sobic006G212800 Sobic006G212800 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic002G206300 Sobic002G206300 Sobic009G207900--Sobic002G206300 Sobic009G207900--Sobic001G504400 Sobic009G207900--Sobic009G219100 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G207900--Sobic009G062400 Sobic004G154400--Sobic009G219100 Sobic004G154400--Sobic001G286600 Sobic004G154400--Sobic009G062400 Sobic010G058200 Sobic010G058200 Sobic004G154400--Sobic010G058200 Sobic002G136100 Sobic002G136100 Sobic004G154400--Sobic002G136100 Sobic004G154400--Sobic009G207900 Sobic004G006400 Sobic004G006400 Sobic004G154400--Sobic004G006400 Sobic004G154400--Sobic009G237000 Sobic004G154400--Sobic006G158700 Sobic002G061900 Sobic002G061900 Sobic006G097500--Sobic002G061900 Sobic006G097500--Sobic002G298800 Sobic004G103300 Sobic004G103300 Sobic006G097500--Sobic004G103300 Sobic006G265900 Sobic006G265900 Sobic006G097500--Sobic006G265900 Sobic001G368600 Sobic001G368600 Sobic006G097500--Sobic001G368600 Sobic010G231500 Sobic010G231500 Sobic006G097500--Sobic010G231500 Sobic007G169100 Sobic007G169100 Sobic006G097500--Sobic007G169100 Sobic005G005400 Sobic005G005400 Sobic006G097500--Sobic005G005400 Sobic005G028800 Sobic005G028800 Sobic006G097500--Sobic005G028800 Sobic003G403900--Sobic006G158700 Sobic009G133700 Sobic009G133700 Sobic003G403900--Sobic009G133700 Sobic009G250400 Sobic009G250400 Sobic003G403900--Sobic009G250400 Sobic007G157300 Sobic007G157300 Sobic003G403900--Sobic007G157300 Sobic003G094100 Sobic003G094100 Sobic003G403900--Sobic003G094100 Sobic004G165700 Sobic004G165700 Sobic003G403900--Sobic004G165700 Sobic003G403900--Sobic001G180200 Sobic009G004100 Sobic009G004100 Sobic003G403900--Sobic009G004100 Sobic003G403900--Sobic007G135800 Sobic003G341300 Sobic003G341300 Sobic001G180200--Sobic003G341300 Sobic001G180200--Sobic002G206300 Sobic001G180200--Sobic007G135800 Sobic001G180200--Sobic009G038701 Sobic001G180200--Sobic009G207900 Sobic001G180200--Sobic003G094100 Sobic001G180200--Sobic001G504400 Sobic001G263100 Sobic001G263100 Sobic001G180200--Sobic001G263100 Sobic002G162400 Sobic002G162400 Sobic001G180200--Sobic002G162400 Sobic003G328100--Sobic007G169100 Sobic001G118400 Sobic001G118400 Sobic003G328100--Sobic001G118400 Sobic006G155500 Sobic006G155500 Sobic003G328100--Sobic006G155500 Sobic006G140700 Sobic006G140700 Sobic003G328100--Sobic006G140700 Sobic007G107700 Sobic007G107700 Sobic003G328100--Sobic007G107700 Sobic003G328100--Sobic001G286600 Sobic003G328100--Sobic010G231500 Sobic004G281900 Sobic004G281900 Sobic003G328100--Sobic004G281900 Sobic003G328100--Sobic006G097500 Sobic001G509200 Sobic001G509200 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic001G393300 Sobic001G393300 Sobic007G135800--Sobic001G393300 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic006G213700 Sobic006G213700 Sobic007G135800--Sobic006G213700 Sobic007G166300 Sobic007G166300 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic007G135800--Sobic003G341300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.