Gene annotation
Transcriptome id Sobic.007G107700.1
Synonym ATCRS1, CRS1, Sb07g015120
Functional annotation chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
UniProt C5YKA1
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF10
NCBI CDD KOG1990; Poly(A)-specific exoribonuclease PARN
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G16180 : ortholog of maize chloroplast splicing factor CRS1
RAP-DB (Rice) LOC_Os08g27150.1 : chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a006191
Brachypodium KQJ96249 , KQJ96248
Barley HORVU1Hr1G001270.1
Wheat TraesCS7D02G553500 , TraesCS7A02G557100
Populus -


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cDNA sequences
Sobic.007G107700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G328100 expressed protein -
2 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
3 Sobic.003G203000 high light inducible protein, putative, expressed -
4 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
5 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
6 Sobic.001G118400 expressed protein -
7 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
8 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
10 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
11 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.007G169100 glutathione S-transferase, N-terminal domain containing protein, expressed -
13 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
14 Sobic.006G212800 expressed protein -
15 Sobic.007G087100 pentatricopeptide, putative, expressed -
16 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
17 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
18 Sobic.009G207900 expressed protein -
19 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
20 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase


Gene co-expression network
sample Sobic007G107700 Sobic007G107700 Sobic003G328100 Sobic003G328100 Sobic007G107700--Sobic003G328100 Sobic003G070900 Sobic003G070900 Sobic007G107700--Sobic003G070900 Sobic003G203000 Sobic003G203000 Sobic007G107700--Sobic003G203000 Sobic009G170200 Sobic009G170200 Sobic007G107700--Sobic009G170200 Sobic005G028800 Sobic005G028800 Sobic007G107700--Sobic005G028800 Sobic001G118400 Sobic001G118400 Sobic007G107700--Sobic001G118400 Sobic007G135800 Sobic007G135800 Sobic007G107700--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic007G107700--Sobic010G231500 Sobic001G368600 Sobic001G368600 Sobic007G107700--Sobic001G368600 Sobic007G169100 Sobic007G169100 Sobic003G328100--Sobic007G169100 Sobic003G328100--Sobic001G118400 Sobic006G155500 Sobic006G155500 Sobic003G328100--Sobic006G155500 Sobic006G140700 Sobic006G140700 Sobic003G328100--Sobic006G140700 Sobic003G328100--Sobic007G107700 Sobic001G286600 Sobic001G286600 Sobic003G328100--Sobic001G286600 Sobic003G328100--Sobic010G231500 Sobic004G281900 Sobic004G281900 Sobic003G328100--Sobic004G281900 Sobic006G097500 Sobic006G097500 Sobic003G328100--Sobic006G097500 Sobic002G133900 Sobic002G133900 Sobic003G070900--Sobic002G133900 Sobic003G287900 Sobic003G287900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G094350 Sobic003G094350 Sobic003G070900--Sobic003G094350 Sobic003G070900--Sobic001G118400 Sobic001G500600 Sobic001G500600 Sobic003G070900--Sobic001G500600 Sobic004G353100 Sobic004G353100 Sobic003G070900--Sobic004G353100 Sobic008G074000 Sobic008G074000 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic003G203000--Sobic007G107700 Sobic009G133700 Sobic009G133700 Sobic003G203000--Sobic009G133700 Sobic003G203000--Sobic007G135800 Sobic004G202200 Sobic004G202200 Sobic003G203000--Sobic004G202200 Sobic003G409700 Sobic003G409700 Sobic003G203000--Sobic003G409700 Sobic003G203000--Sobic002G133900 Sobic007G157300 Sobic007G157300 Sobic003G203000--Sobic007G157300 Sobic006G158700 Sobic006G158700 Sobic003G203000--Sobic006G158700 Sobic009G237000 Sobic009G237000 Sobic003G203000--Sobic009G237000 Sobic009G170200--Sobic003G070900 Sobic006G232600 Sobic006G232600 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic009G170200--Sobic002G133900 Sobic001G077300 Sobic001G077300 Sobic009G170200--Sobic001G077300 Sobic009G170200--Sobic004G353100 Sobic001G378100 Sobic001G378100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic007G166300 Sobic007G166300 Sobic005G028800--Sobic007G166300 Sobic005G028800--Sobic004G103300 Sobic001G509200 Sobic001G509200 Sobic005G028800--Sobic001G509200 Sobic004G124400 Sobic004G124400 Sobic005G028800--Sobic004G124400 Sobic001G015200 Sobic001G015200 Sobic005G028800--Sobic001G015200 Sobic005G028800--Sobic007G135800 Sobic005G028800--Sobic010G231500 Sobic001G393300 Sobic001G393300 Sobic005G028800--Sobic001G393300 Sobic007G124500 Sobic007G124500 Sobic005G028800--Sobic007G124500 Sobic001G118400--Sobic006G155500 Sobic001G118400--Sobic003G070900 Sobic001G118400--Sobic003G328100 Sobic004G165900 Sobic004G165900 Sobic001G118400--Sobic004G165900 Sobic001G118400--Sobic001G286600 Sobic002G061900 Sobic002G061900 Sobic001G118400--Sobic002G061900 Sobic010G056300 Sobic010G056300 Sobic001G118400--Sobic010G056300 Sobic004G252500 Sobic004G252500 Sobic001G118400--Sobic004G252500 Sobic001G118400--Sobic006G140700 Sobic007G135800--Sobic001G509200 Sobic003G094100 Sobic003G094100 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic006G213700 Sobic006G213700 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic009G004100 Sobic009G004100 Sobic010G231500--Sobic009G004100 Sobic010G231500--Sobic006G097500 Sobic004G300100 Sobic004G300100 Sobic010G231500--Sobic004G300100 Sobic010G231500--Sobic004G103300 Sobic010G231500--Sobic007G124500 Sobic010G231500--Sobic005G028800 Sobic010G231500--Sobic004G124400 Sobic010G231500--Sobic001G368600 Sobic002G356900 Sobic002G356900 Sobic010G231500--Sobic002G356900 Sobic001G368600--Sobic004G103300 Sobic001G368600--Sobic006G097500 Sobic002G298800 Sobic002G298800 Sobic001G368600--Sobic002G298800 Sobic001G368600--Sobic001G393300 Sobic001G368600--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G368600--Sobic002G072500 Sobic002G198300 Sobic002G198300 Sobic001G368600--Sobic002G198300 Sobic001G368600--Sobic007G166300 Sobic006G025500 Sobic006G025500 Sobic001G368600--Sobic006G025500
Octagon: transcription factors


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