Gene annotation
Transcriptome id Sobic.003G403900.1,Sobic.003G403900.3,Sobic.003G403900.2
Synonym SbPIN5, PIN5, efflux carriers pin-formed, Sb03g043960
Functional annotation "domain confirmed by Pfam database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
auxin efflux carrier component, putative, expressed
UniProt A0A1W0W138 , A0A1W0W140 , A0A1B6Q7V4
Pfam PF03547
Panther DB PTHR31752 PTHR31752:SF2
NCBI CDD -
KEGG Orthology K13947; auxin efflux carrier family protein
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G16530 : Auxin efflux carrier family protein
RAP-DB (Rice) LOC_Os01g69070.1 : auxin efflux carrier component, putative, expressed
MaizeGDB (Corn) Zm00025a026277 , Zm00025a014297
Brachypodium PNT73475 , PNT73474 , KQK11234
Barley HORVU3Hr1G094000.1 , HORVU3Hr1G094000.2 , HORVU3Hr1G094000.3 , HORVU3Hr1G094000.4 , HORVU3Hr1G094000.5 , HORVU3Hr1G094000.6 , HORVU3Hr1G094000.7
Wheat TraesCS7A02G258800 , TraesCS3A02G426700 , TraesCS3B02G462900 , TraesCS3D02G421600 , TraesCS7D02G259700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G158700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
2 Sobic.009G133700 expressed protein -
3 Sobic.009G250400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed K03093: RNA polymerase sigma factor
4 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
5 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G165700 expressed protein -
7 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
8 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
9 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
10 Sobic.009G038701 - -
11 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
13 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
14 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
15 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
16 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
17 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
18 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
19 Sobic.002G408000 KIP1, putative, expressed -
20 Sobic.001G317800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic003G403900 Sobic003G403900 Sobic006G158700 Sobic006G158700 Sobic003G403900--Sobic006G158700 Sobic009G133700 Sobic009G133700 Sobic003G403900--Sobic009G133700 Sobic009G250400 Sobic009G250400 Sobic003G403900--Sobic009G250400 Sobic007G157300 Sobic007G157300 Sobic003G403900--Sobic007G157300 Sobic003G094100 Sobic003G094100 Sobic003G403900--Sobic003G094100 Sobic004G165700 Sobic004G165700 Sobic003G403900--Sobic004G165700 Sobic001G180200 Sobic001G180200 Sobic003G403900--Sobic001G180200 Sobic009G004100 Sobic009G004100 Sobic003G403900--Sobic009G004100 Sobic007G135800 Sobic007G135800 Sobic003G403900--Sobic007G135800 Sobic009G062400 Sobic009G062400 Sobic006G158700--Sobic009G062400 Sobic009G237000 Sobic009G237000 Sobic006G158700--Sobic009G237000 Sobic009G207900 Sobic009G207900 Sobic006G158700--Sobic009G207900 Sobic004G154400 Sobic004G154400 Sobic006G158700--Sobic004G154400 Sobic006G097500 Sobic006G097500 Sobic006G158700--Sobic006G097500 Sobic006G158700--Sobic003G403900 Sobic006G158700--Sobic001G180200 Sobic003G328100 Sobic003G328100 Sobic006G158700--Sobic003G328100 Sobic006G158700--Sobic007G135800 Sobic009G133700--Sobic007G157300 Sobic003G409700 Sobic003G409700 Sobic009G133700--Sobic003G409700 Sobic009G133700--Sobic003G094100 Sobic003G341300 Sobic003G341300 Sobic009G133700--Sobic003G341300 Sobic002G047400 Sobic002G047400 Sobic009G133700--Sobic002G047400 Sobic009G133700--Sobic007G135800 Sobic003G005000 Sobic003G005000 Sobic009G133700--Sobic003G005000 Sobic003G228300 Sobic003G228300 Sobic009G133700--Sobic003G228300 Sobic004G202200 Sobic004G202200 Sobic009G133700--Sobic004G202200 Sobic009G250400--Sobic003G228300 Sobic009G250400--Sobic003G341300 Sobic001G485100 Sobic001G485100 Sobic009G250400--Sobic001G485100 Sobic009G250400--Sobic009G133700 Sobic004G128900 Sobic004G128900 Sobic009G250400--Sobic004G128900 Sobic009G250400--Sobic001G180200 Sobic006G191500 Sobic006G191500 Sobic009G250400--Sobic006G191500 Sobic006G161500 Sobic006G161500 Sobic009G250400--Sobic006G161500 Sobic007G065600 Sobic007G065600 Sobic009G250400--Sobic007G065600 Sobic007G157300--Sobic009G133700 Sobic007G157300--Sobic003G341300 Sobic007G157300--Sobic003G094100 Sobic001G283100 Sobic001G283100 Sobic007G157300--Sobic001G283100 Sobic007G108900 Sobic007G108900 Sobic007G157300--Sobic007G108900 Sobic007G157300--Sobic007G135800 Sobic001G393300 Sobic001G393300 Sobic007G157300--Sobic001G393300 Sobic001G509200 Sobic001G509200 Sobic007G157300--Sobic001G509200 Sobic007G157300--Sobic003G409700 Sobic003G094100--Sobic007G108900 Sobic003G094100--Sobic001G509200 Sobic003G094100--Sobic007G135800 Sobic003G094100--Sobic001G393300 Sobic003G094100--Sobic001G283100 Sobic003G094100--Sobic007G157300 Sobic004G103300 Sobic004G103300 Sobic003G094100--Sobic004G103300 Sobic003G094100--Sobic001G180200 Sobic002G298800 Sobic002G298800 Sobic003G094100--Sobic002G298800 Sobic004G165700--Sobic003G403900 Sobic004G165700--Sobic009G133700 Sobic004G165700--Sobic007G157300 Sobic004G165700--Sobic009G004100 Sobic010G042400 Sobic010G042400 Sobic004G165700--Sobic010G042400 Sobic003G203000 Sobic003G203000 Sobic004G165700--Sobic003G203000 Sobic004G165700--Sobic006G158700 Sobic004G165700--Sobic009G237000 Sobic009G024300 Sobic009G024300 Sobic004G165700--Sobic009G024300 Sobic001G180200--Sobic003G341300 Sobic002G206300 Sobic002G206300 Sobic001G180200--Sobic002G206300 Sobic001G180200--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic001G180200--Sobic009G038701 Sobic001G180200--Sobic009G207900 Sobic001G180200--Sobic003G094100 Sobic001G504400 Sobic001G504400 Sobic001G180200--Sobic001G504400 Sobic001G263100 Sobic001G263100 Sobic001G180200--Sobic001G263100 Sobic002G162400 Sobic002G162400 Sobic001G180200--Sobic002G162400 Sobic010G231500 Sobic010G231500 Sobic009G004100--Sobic010G231500 Sobic001G368600 Sobic001G368600 Sobic009G004100--Sobic001G368600 Sobic007G124500 Sobic007G124500 Sobic009G004100--Sobic007G124500 Sobic009G004100--Sobic006G097500 Sobic007G166300 Sobic007G166300 Sobic009G004100--Sobic007G166300 Sobic009G004100--Sobic004G103300 Sobic010G100900 Sobic010G100900 Sobic009G004100--Sobic010G100900 Sobic005G028800 Sobic005G028800 Sobic009G004100--Sobic005G028800 Sobic002G072500 Sobic002G072500 Sobic009G004100--Sobic002G072500 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic006G213700 Sobic006G213700 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic007G135800--Sobic003G409700 Sobic007G135800--Sobic003G341300
Octagon: transcription factors


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