Gene annotation
| Transcriptome id | Sobic.004G165700.2,Sobic.004G165700.1 |
|---|---|
| Synonym | Sb04g021710 |
| Functional annotation | expressed protein |
| UniProt | C5XTF1 , A0A1Z5RMZ4 , A0A097PNH6 |
| Pfam | - |
| Panther DB | PTHR10072 PTHR10072:SF43 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G03900 : Iron-sulphur cluster biosynthesis family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g33010.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a020543 |
| Brachypodium | KQJ99732 , KQJ99730 , KQJ99731 , KQJ99729 |
| Barley | HORVU6Hr1G047040.11 , HORVU6Hr1G047040.10 , HORVU6Hr1G047040.12 , HORVU6Hr1G047040.15 , HORVU6Hr1G047040.9 , HORVU6Hr1G047040.8 , HORVU6Hr1G047040.5 , HORVU6Hr1G047040.4 , HORVU6Hr1G047040.7 , HORVU6Hr1G047040.6 , HORVU6Hr1G047040.1 , HORVU6Hr1G047040.3 , HORVU6Hr1G047040.2 |
| Wheat | TraesCS6A02G199600 , TraesCS6D02G184100 , TraesCS6B02G224200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G403900 | "domain confirmed by Pfam database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed | K13947: auxin efflux carrier family protein |
| 2 | Sobic.009G133700 | expressed protein | - |
| 3 | Sobic.007G157300 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 4 | Sobic.009G004100 | -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed | K15918: D-glycerate 3-kinase |
| 5 | Sobic.010G042400 | -(PubMedID : 26465154)@expressed protein | - |
| 6 | Sobic.003G203000 | high light inducible protein, putative, expressed | - |
| 7 | Sobic.006G158700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed | K15095: (+)-neomenthol dehydrogenase |
| 8 | Sobic.009G237000 | OsDegp9 - Putative Deg protease homologue, expressed | - |
| 9 | Sobic.009G024300 | inner membrane protein alx, putative, expressed | - |
| 10 | Sobic.002G258600 | expressed protein | - |
| 11 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 12 | Sobic.007G015500 | no apical meristem protein, putative, expressed | - |
| 13 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 14 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 15 | Sobic.003G341300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.009G170200 | translation initiation factor IF-2, chloroplast precursor, putative, expressed | K02519: infB, translation initiation factor IF-2 |
| 17 | Sobic.002G298800 | PAP fibrillin family domain containing protein, expressed | - |
| 18 | Sobic.006G065100 | ERD1 protein, chloroplast precursor, putative, expressed | K03696: ATP-dependent Clp protease ATP-binding subunit ClpC |
| 19 | Sobic.002G132400 | -(PubMedID : 26465154)@expressed protein | - |
| 20 | Sobic.001G180200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed | K13348: protein Mpv17 |
Gene co-expression network
Octagon: transcription factors
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