Gene annotation
Transcriptome id Sobic.009G024300.3
Synonym Sb09g002050, ATTERC, PDE149
Functional annotation inner membrane protein alx, putative, expressed
UniProt C5YZ18
Pfam PF03741
Panther DB PTHR30238 PTHR30238:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G12130 : integral membrane TerC family protein
RAP-DB (Rice) LOC_Os05g03000.2 : inner membrane protein alx, putative, expressed
MaizeGDB (Corn) Zm00025a038207 , Zm00025a040771
Brachypodium PNT71954 , PNT71953 , KQK07812 , KQK07811
Barley HORVU1Hr1G010930.6 , HORVU1Hr1G010930.7 , HORVU1Hr1G010930.4 , HORVU1Hr1G010930.5 , HORVU1Hr1G010930.2 , HORVU1Hr1G010930.3 , HORVU1Hr1G010930.1 , HORVU1Hr1G010930.8
Wheat TraesCS1D02G055700 , TraesCS1B02G071800 , TraesCS1A02G055000
Populus -


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cDNA sequences
Sobic.009G024300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G516901 - -
2 Sobic.002G258600 expressed protein -
3 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
4 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
5 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
6 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
7 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
8 Sobic.003G085100 MYB family transcription factor, putative, expressed -
9 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
10 Sobic.004G019800 MATE domain containing protein, expressed -
11 Sobic.003G233700 SET domain-containing protein, putative, expressed -
12 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
13 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.010G035400 expressed protein -
16 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
17 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
18 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
20 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase


Gene co-expression network
sample Sobic009G024300 Sobic009G024300 Sobic001G516901 Sobic001G516901 Sobic009G024300--Sobic001G516901 Sobic002G258600 Sobic002G258600 Sobic009G024300--Sobic002G258600 Sobic004G328400 Sobic004G328400 Sobic009G024300--Sobic004G328400 Sobic003G151500 Sobic003G151500 Sobic009G024300--Sobic003G151500 Sobic001G500600 Sobic001G500600 Sobic009G024300--Sobic001G500600 Sobic007G162600 Sobic007G162600 Sobic009G024300--Sobic007G162600 Sobic003G287900 Sobic003G287900 Sobic009G024300--Sobic003G287900 Sobic003G085100 Sobic003G085100 Sobic009G024300--Sobic003G085100 Sobic005G063000 Sobic005G063000 Sobic009G024300--Sobic005G063000 Sobic001G516901--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic001G516901--Sobic006G197300 Sobic004G336200 Sobic004G336200 Sobic001G516901--Sobic004G336200 Sobic002G043600 Sobic002G043600 Sobic001G516901--Sobic002G043600 Sobic001G516901--Sobic009G024300 Sobic010G035400 Sobic010G035400 Sobic001G516901--Sobic010G035400 Sobic004G238200 Sobic004G238200 Sobic001G516901--Sobic004G238200 Sobic001G516901--Sobic002G258600 Sobic003G160800 Sobic003G160800 Sobic001G516901--Sobic003G160800 Sobic008G074000 Sobic008G074000 Sobic002G258600--Sobic008G074000 Sobic001G183000 Sobic001G183000 Sobic002G258600--Sobic001G183000 Sobic004G019800 Sobic004G019800 Sobic002G258600--Sobic004G019800 Sobic002G258600--Sobic009G024300 Sobic009G237000 Sobic009G237000 Sobic002G258600--Sobic009G237000 Sobic002G118200 Sobic002G118200 Sobic002G258600--Sobic002G118200 Sobic002G258600--Sobic001G516901 Sobic002G258600--Sobic007G162600 Sobic002G258600--Sobic003G287900 Sobic003G141100 Sobic003G141100 Sobic004G328400--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic004G328400--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic004G328400--Sobic003G372900 Sobic004G328400--Sobic001G500600 Sobic004G328400--Sobic004G336200 Sobic001G054100 Sobic001G054100 Sobic004G328400--Sobic001G054100 Sobic003G301300 Sobic003G301300 Sobic004G328400--Sobic003G301300 Sobic003G150800 Sobic003G150800 Sobic004G328400--Sobic003G150800 Sobic004G328400--Sobic003G160800 Sobic009G148500 Sobic009G148500 Sobic003G151500--Sobic009G148500 Sobic002G406700 Sobic002G406700 Sobic003G151500--Sobic002G406700 Sobic003G432500 Sobic003G432500 Sobic003G151500--Sobic003G432500 Sobic003G151500--Sobic004G336200 Sobic001G126300 Sobic001G126300 Sobic003G151500--Sobic001G126300 Sobic005G110400 Sobic005G110400 Sobic003G151500--Sobic005G110400 Sobic001G083100 Sobic001G083100 Sobic003G151500--Sobic001G083100 Sobic003G151500--Sobic003G372900 Sobic008G073100 Sobic008G073100 Sobic003G151500--Sobic008G073100 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic007G162600--Sobic001G500600 Sobic007G162600--Sobic003G070900 Sobic007G162600--Sobic002G258600 Sobic007G162600--Sobic003G094350 Sobic008G006100 Sobic008G006100 Sobic007G162600--Sobic008G006100 Sobic007G162600--Sobic009G237000 Sobic009G170200 Sobic009G170200 Sobic007G162600--Sobic009G170200 Sobic007G162600--Sobic001G516901 Sobic007G162600--Sobic003G287900 Sobic003G287900--Sobic003G070900 Sobic003G287900--Sobic002G133900 Sobic003G287900--Sobic003G094350 Sobic003G233700 Sobic003G233700 Sobic003G287900--Sobic003G233700 Sobic003G287900--Sobic001G500600 Sobic004G353100 Sobic004G353100 Sobic003G287900--Sobic004G353100 Sobic003G287900--Sobic004G336200 Sobic003G287900--Sobic008G074000 Sobic003G287900--Sobic009G170200 Sobic003G085100--Sobic003G150800 Sobic007G005400 Sobic007G005400 Sobic003G085100--Sobic007G005400 Sobic005G111550 Sobic005G111550 Sobic003G085100--Sobic005G111550 Sobic003G085100--Sobic003G160800 Sobic003G085100--Sobic005G063000 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G085100--Sobic003G287900 Sobic008G001900 Sobic008G001900 Sobic003G085100--Sobic008G001900 Sobic004G211600 Sobic004G211600 Sobic005G063000--Sobic004G211600 Sobic005G204200 Sobic005G204200 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G001700 Sobic005G001700 Sobic005G063000--Sobic005G001700 Sobic005G063000--Sobic003G085100 Sobic005G063000--Sobic003G160800 Sobic010G214100 Sobic010G214100 Sobic005G063000--Sobic010G214100 Sobic007G103400 Sobic007G103400 Sobic005G063000--Sobic007G103400 Sobic010G043800 Sobic010G043800 Sobic005G063000--Sobic010G043800
Octagon: transcription factors


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