Gene annotation
Transcriptome id Sobic.004G328400.5,Sobic.004G328400.4,Sobic.004G328400.6,Sobic.004G328400.1,Sobic.004G328400.2,Sobic.004G328400.3
Synonym Sb04g035750
Functional annotation translation initiation factor IF-3, putative, expressed
UniProt C6JSS7 , C5XUE7
Pfam PF05198 PF00707
Panther DB PTHR10938 PTHR10938:SF0
NCBI CDD -
KEGG Orthology K02520; infC, translation initiation factor IF-3
Gene Ontology GO:0006413; translational initiation GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT2G24060 : Translation initiation factor 3 protein
RAP-DB (Rice) LOC_Os02g55120.1 : translation initiation factor IF-3, putative, expressed
MaizeGDB (Corn) Zm00025a022449
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G328400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
2 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
3 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
4 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
5 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
7 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
8 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
9 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
11 Sobic.009G024300 inner membrane protein alx, putative, expressed -
12 Sobic.009G121000 expressed protein -
13 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
14 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
15 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
16 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
17 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
18 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
19 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
20 Sobic.003G352500 ribonuclease protein, putative, expressed -


Gene co-expression network
sample Sobic004G328400 Sobic004G328400 Sobic003G141100 Sobic003G141100 Sobic004G328400--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic004G328400--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic004G328400--Sobic003G372900 Sobic001G500600 Sobic001G500600 Sobic004G328400--Sobic001G500600 Sobic004G336200 Sobic004G336200 Sobic004G328400--Sobic004G336200 Sobic001G054100 Sobic001G054100 Sobic004G328400--Sobic001G054100 Sobic003G301300 Sobic003G301300 Sobic004G328400--Sobic003G301300 Sobic003G150800 Sobic003G150800 Sobic004G328400--Sobic003G150800 Sobic003G160800 Sobic003G160800 Sobic004G328400--Sobic003G160800 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic002G181000 Sobic002G181000 Sobic003G232700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic003G232700--Sobic002G043600 Sobic001G495200 Sobic001G495200 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G352500 Sobic003G352500 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G232700--Sobic003G301300 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic001G083100 Sobic001G083100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G094350 Sobic003G094350 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic001G054100--Sobic004G328400 Sobic003G301300--Sobic008G073100 Sobic003G301300--Sobic001G500600 Sobic003G301300--Sobic004G336200 Sobic003G301300--Sobic010G035400 Sobic003G301300--Sobic003G160800 Sobic003G301300--Sobic005G110400 Sobic003G301300--Sobic002G406700 Sobic003G301300--Sobic003G232700 Sobic001G126300 Sobic001G126300 Sobic003G301300--Sobic001G126300 Sobic003G085100 Sobic003G085100 Sobic003G150800--Sobic003G085100 Sobic002G042500 Sobic002G042500 Sobic003G150800--Sobic002G042500 Sobic005G111550 Sobic005G111550 Sobic003G150800--Sobic005G111550 Sobic007G005400 Sobic007G005400 Sobic003G150800--Sobic007G005400 Sobic003G150800--Sobic001G037500 Sobic005G063000 Sobic005G063000 Sobic003G150800--Sobic005G063000 Sobic002G314400 Sobic002G314400 Sobic003G150800--Sobic002G314400 Sobic003G150800--Sobic004G328400 Sobic003G150800--Sobic003G141100 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500
Octagon: transcription factors


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