Gene annotation
Transcriptome id Sobic.005G063000.1
Synonym Sb05g005300
Functional annotation short chain dehydrogenase/reductase protein, putative, expressed
UniProt C5Y669
Pfam PF08659
Panther DB PTHR31942 PTHR31942:SF28
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23430 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os11g07922.1 : short chain dehydrogenase/reductase protein, putative, expressed
MaizeGDB (Corn) Zm00025a052038 , Zm00025a034033
Brachypodium KQJ89161
Barley -
Wheat TraesCS4A02G218300
Populus -


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cDNA sequences
Sobic.005G063000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G211600 psaB translation factor, putative, expressed -
2 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
3 Sobic.009G121000 expressed protein -
4 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
5 Sobic.003G085100 MYB family transcription factor, putative, expressed -
6 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.010G214100 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
8 Sobic.007G103400 expressed protein -
9 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
10 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
11 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
12 Sobic.005G111550 - -
13 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
14 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
15 Sobic.003G233700 SET domain-containing protein, putative, expressed -
16 Sobic.003G398800 expressed protein -
17 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
18 Sobic.010G035400 expressed protein -
19 Sobic.006G101500 expressed protein -
20 Sobic.002G220900 expressed protein -


Gene co-expression network
sample Sobic005G063000 Sobic005G063000 Sobic004G211600 Sobic004G211600 Sobic005G063000--Sobic004G211600 Sobic005G204200 Sobic005G204200 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G001700 Sobic005G001700 Sobic005G063000--Sobic005G001700 Sobic003G085100 Sobic003G085100 Sobic005G063000--Sobic003G085100 Sobic003G160800 Sobic003G160800 Sobic005G063000--Sobic003G160800 Sobic010G214100 Sobic010G214100 Sobic005G063000--Sobic010G214100 Sobic007G103400 Sobic007G103400 Sobic005G063000--Sobic007G103400 Sobic010G043800 Sobic010G043800 Sobic005G063000--Sobic010G043800 Sobic006G101500 Sobic006G101500 Sobic004G211600--Sobic006G101500 Sobic004G211600--Sobic005G063000 Sobic001G183000 Sobic001G183000 Sobic004G211600--Sobic001G183000 Sobic004G211600--Sobic010G214100 Sobic008G006100 Sobic008G006100 Sobic004G211600--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic004G211600--Sobic001G134700 Sobic009G062400 Sobic009G062400 Sobic004G211600--Sobic009G062400 Sobic004G298900 Sobic004G298900 Sobic004G211600--Sobic004G298900 Sobic004G211600--Sobic003G160800 Sobic005G204200--Sobic003G160800 Sobic005G204200--Sobic005G063000 Sobic002G220900 Sobic002G220900 Sobic005G204200--Sobic002G220900 Sobic005G204200--Sobic005G001700 Sobic003G233700 Sobic003G233700 Sobic005G204200--Sobic003G233700 Sobic010G035400 Sobic010G035400 Sobic005G204200--Sobic010G035400 Sobic005G204200--Sobic007G103400 Sobic005G204200--Sobic003G085100 Sobic004G336200 Sobic004G336200 Sobic005G204200--Sobic004G336200 Sobic009G121000--Sobic010G043800 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700 Sobic008G001900 Sobic008G001900 Sobic005G001700--Sobic008G001900 Sobic005G001700--Sobic002G220900 Sobic005G001700--Sobic005G204200 Sobic010G067100 Sobic010G067100 Sobic005G001700--Sobic010G067100 Sobic005G001700--Sobic005G063000 Sobic003G185900 Sobic003G185900 Sobic005G001700--Sobic003G185900 Sobic002G402700 Sobic002G402700 Sobic005G001700--Sobic002G402700 Sobic003G036200 Sobic003G036200 Sobic005G001700--Sobic003G036200 Sobic007G009200 Sobic007G009200 Sobic005G001700--Sobic007G009200 Sobic003G150800 Sobic003G150800 Sobic003G085100--Sobic003G150800 Sobic007G005400 Sobic007G005400 Sobic003G085100--Sobic007G005400 Sobic005G111550 Sobic005G111550 Sobic003G085100--Sobic005G111550 Sobic003G085100--Sobic003G160800 Sobic003G085100--Sobic005G063000 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G287900 Sobic003G287900 Sobic003G085100--Sobic003G287900 Sobic003G085100--Sobic008G001900 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G387100 Sobic003G387100 Sobic003G160800--Sobic003G387100 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic010G214100--Sobic006G101500 Sobic010G214100--Sobic003G160800 Sobic010G214100--Sobic003G387100 Sobic010G214100--Sobic005G063000 Sobic009G125400 Sobic009G125400 Sobic010G214100--Sobic009G125400 Sobic007G085800 Sobic007G085800 Sobic010G214100--Sobic007G085800 Sobic010G214100--Sobic004G211600 Sobic008G116300 Sobic008G116300 Sobic010G214100--Sobic008G116300 Sobic007G052400 Sobic007G052400 Sobic010G214100--Sobic007G052400 Sobic009G237000 Sobic009G237000 Sobic007G103400--Sobic009G237000 Sobic002G298800 Sobic002G298800 Sobic007G103400--Sobic002G298800 Sobic004G353100 Sobic004G353100 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic007G103400--Sobic001G504400 Sobic003G306200 Sobic003G306200 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic007G103400--Sobic003G233700 Sobic002G275300 Sobic002G275300 Sobic007G103400--Sobic002G275300 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic010G043800--Sobic001G504400 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic010G043800--Sobic006G158100 Sobic010G043800--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic010G043800--Sobic001G169900 Sobic001G378100 Sobic001G378100 Sobic010G043800--Sobic001G378100
Octagon: transcription factors


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