Gene annotation
Transcriptome id Sobic.004G211600.1
Synonym Sb04g025690, ATAB2
Functional annotation psaB translation factor, putative, expressed
UniProt C5XXA9
Pfam PF06485
Panther DB PTHR34556 PTHR34556:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08010 : RNA binding
RAP-DB (Rice) LOC_Os02g39740.1 : psaB translation factor, putative, expressed
MaizeGDB (Corn) Zm00025a021213
Brachypodium -
Barley -
Wheat TraesCS6D02G202300 , TraesCS6D02G202300 , TraesCS6B02G248700 , TraesCS6A02G219200
Populus -


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cDNA sequences
Sobic.004G211600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G101500 expressed protein -
2 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
3 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
4 Sobic.010G214100 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
5 Sobic.008G006100 MATE efflux protein, putative, expressed -
6 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
7 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
8 Sobic.004G298900 OR, putative, expressed -
9 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
12 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
13 Sobic.009G121000 expressed protein -
14 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.006G260800 phosphatidate cytidylyltransferase, putative, expressed K18678: phytol kinase
16 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
17 Sobic.001G048400 pheophorbide a oxygenase, chloroplast precursor, putative, expressed -
18 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
19 Sobic.007G103400 expressed protein -
20 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1


Gene co-expression network
sample Sobic004G211600 Sobic004G211600 Sobic006G101500 Sobic006G101500 Sobic004G211600--Sobic006G101500 Sobic005G063000 Sobic005G063000 Sobic004G211600--Sobic005G063000 Sobic001G183000 Sobic001G183000 Sobic004G211600--Sobic001G183000 Sobic010G214100 Sobic010G214100 Sobic004G211600--Sobic010G214100 Sobic008G006100 Sobic008G006100 Sobic004G211600--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic004G211600--Sobic001G134700 Sobic009G062400 Sobic009G062400 Sobic004G211600--Sobic009G062400 Sobic004G298900 Sobic004G298900 Sobic004G211600--Sobic004G298900 Sobic003G160800 Sobic003G160800 Sobic004G211600--Sobic003G160800 Sobic003G387100 Sobic003G387100 Sobic006G101500--Sobic003G387100 Sobic002G102200 Sobic002G102200 Sobic006G101500--Sobic002G102200 Sobic006G101500--Sobic001G183000 Sobic006G101500--Sobic004G211600 Sobic006G101500--Sobic001G134700 Sobic003G431700 Sobic003G431700 Sobic006G101500--Sobic003G431700 Sobic003G412900 Sobic003G412900 Sobic006G101500--Sobic003G412900 Sobic006G093900 Sobic006G093900 Sobic006G101500--Sobic006G093900 Sobic006G101500--Sobic008G006100 Sobic005G063000--Sobic004G211600 Sobic005G204200 Sobic005G204200 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G001700 Sobic005G001700 Sobic005G063000--Sobic005G001700 Sobic003G085100 Sobic003G085100 Sobic005G063000--Sobic003G085100 Sobic005G063000--Sobic003G160800 Sobic005G063000--Sobic010G214100 Sobic007G103400 Sobic007G103400 Sobic005G063000--Sobic007G103400 Sobic010G043800 Sobic010G043800 Sobic005G063000--Sobic010G043800 Sobic001G183000--Sobic006G101500 Sobic002G258600 Sobic002G258600 Sobic001G183000--Sobic002G258600 Sobic009G237000 Sobic009G237000 Sobic001G183000--Sobic009G237000 Sobic001G183000--Sobic001G134700 Sobic001G183000--Sobic004G211600 Sobic001G183000--Sobic008G006100 Sobic001G183000--Sobic003G160800 Sobic001G521200 Sobic001G521200 Sobic001G183000--Sobic001G521200 Sobic001G183000--Sobic005G001700 Sobic010G214100--Sobic006G101500 Sobic010G214100--Sobic003G160800 Sobic010G214100--Sobic003G387100 Sobic010G214100--Sobic005G063000 Sobic009G125400 Sobic009G125400 Sobic010G214100--Sobic009G125400 Sobic007G085800 Sobic007G085800 Sobic010G214100--Sobic007G085800 Sobic010G214100--Sobic004G211600 Sobic008G116300 Sobic008G116300 Sobic010G214100--Sobic008G116300 Sobic007G052400 Sobic007G052400 Sobic010G214100--Sobic007G052400 Sobic002G112400 Sobic002G112400 Sobic008G006100--Sobic002G112400 Sobic001G128600 Sobic001G128600 Sobic008G006100--Sobic001G128600 Sobic008G006100--Sobic009G062400 Sobic001G500600 Sobic001G500600 Sobic008G006100--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic008G006100--Sobic003G070900 Sobic008G006100--Sobic009G237000 Sobic008G006100--Sobic001G134700 Sobic003G233700 Sobic003G233700 Sobic008G006100--Sobic003G233700 Sobic008G006100--Sobic007G103400 Sobic004G336200 Sobic004G336200 Sobic001G134700--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic001G134700--Sobic005G100300 Sobic001G134700--Sobic003G160800 Sobic001G134700--Sobic008G006100 Sobic001G134700--Sobic006G101500 Sobic001G134700--Sobic001G500600 Sobic008G073100 Sobic008G073100 Sobic001G134700--Sobic008G073100 Sobic005G110400 Sobic005G110400 Sobic001G134700--Sobic005G110400 Sobic001G134700--Sobic003G387100 Sobic009G062400--Sobic008G006100 Sobic009G062400--Sobic002G112400 Sobic009G207900 Sobic009G207900 Sobic009G062400--Sobic009G207900 Sobic009G219100 Sobic009G219100 Sobic009G062400--Sobic009G219100 Sobic003G037300 Sobic003G037300 Sobic009G062400--Sobic003G037300 Sobic004G154400 Sobic004G154400 Sobic009G062400--Sobic004G154400 Sobic001G286600 Sobic001G286600 Sobic009G062400--Sobic001G286600 Sobic003G345500 Sobic003G345500 Sobic009G062400--Sobic003G345500 Sobic003G284800 Sobic003G284800 Sobic009G062400--Sobic003G284800 Sobic004G298900--Sobic003G037300 Sobic004G298900--Sobic009G062400 Sobic006G258700 Sobic006G258700 Sobic004G298900--Sobic006G258700 Sobic004G298900--Sobic008G006100 Sobic003G014300 Sobic003G014300 Sobic004G298900--Sobic003G014300 Sobic004G298900--Sobic002G102200 Sobic005G111550 Sobic005G111550 Sobic004G298900--Sobic005G111550 Sobic004G151500 Sobic004G151500 Sobic004G298900--Sobic004G151500 Sobic006G260800 Sobic006G260800 Sobic004G298900--Sobic006G260800 Sobic003G160800--Sobic004G336200 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic003G160800--Sobic007G103400 Sobic003G160800--Sobic002G112400 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500
Octagon: transcription factors


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