Gene annotation
Transcriptome id Sobic.010G214100.1
Synonym PGDH, Sb10g026070
Functional annotation D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
UniProt C5Z776
Pfam PF07991 PF01842 PF00389
Panther DB PTHR10996 PTHR10996:SF159
NCBI CDD -
KEGG Orthology K00058; serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
Gene Ontology GO:0016597; amino acid binding GO:0008152metabolic process GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G17745 : D-3-phosphoglycerate dehydrogenase
RAP-DB (Rice) LOC_Os06g44460.1 : D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a009508 , Zm00025a051714 , Zm00025a005822
Brachypodium KQK16889 , KQK13007 , KQJ85000
Barley HORVU7Hr1G111190.2 , HORVU7Hr1G111190.3 , HORVU7Hr1G111190.1 , HORVU7Hr1G111190.6 , HORVU7Hr1G111190.7 , HORVU7Hr1G111190.4 , HORVU7Hr1G111190.5
Wheat TraesCS7D02G483800 , TraesCS7A02G496500 , TraesCS2A02G508900 , TraesCS7B02G400800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G101500 expressed protein -
2 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
4 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
5 Sobic.009G125400 FZL, putative, expressed -
6 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
7 Sobic.004G211600 psaB translation factor, putative, expressed -
8 Sobic.008G116300 expressed protein -
9 Sobic.007G052400 rubredoxin family protein, putative, expressed -
10 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
11 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.006G260800 phosphatidate cytidylyltransferase, putative, expressed K18678: phytol kinase
13 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
15 Sobic.006G010900 expressed protein -
16 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
17 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
18 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
19 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
20 Sobic.003G085100 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic010G214100 Sobic010G214100 Sobic006G101500 Sobic006G101500 Sobic010G214100--Sobic006G101500 Sobic003G160800 Sobic003G160800 Sobic010G214100--Sobic003G160800 Sobic003G387100 Sobic003G387100 Sobic010G214100--Sobic003G387100 Sobic005G063000 Sobic005G063000 Sobic010G214100--Sobic005G063000 Sobic009G125400 Sobic009G125400 Sobic010G214100--Sobic009G125400 Sobic007G085800 Sobic007G085800 Sobic010G214100--Sobic007G085800 Sobic004G211600 Sobic004G211600 Sobic010G214100--Sobic004G211600 Sobic008G116300 Sobic008G116300 Sobic010G214100--Sobic008G116300 Sobic007G052400 Sobic007G052400 Sobic010G214100--Sobic007G052400 Sobic006G101500--Sobic003G387100 Sobic002G102200 Sobic002G102200 Sobic006G101500--Sobic002G102200 Sobic001G183000 Sobic001G183000 Sobic006G101500--Sobic001G183000 Sobic006G101500--Sobic004G211600 Sobic001G134700 Sobic001G134700 Sobic006G101500--Sobic001G134700 Sobic003G431700 Sobic003G431700 Sobic006G101500--Sobic003G431700 Sobic003G412900 Sobic003G412900 Sobic006G101500--Sobic003G412900 Sobic006G093900 Sobic006G093900 Sobic006G101500--Sobic006G093900 Sobic008G006100 Sobic008G006100 Sobic006G101500--Sobic008G006100 Sobic004G336200 Sobic004G336200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic003G387100--Sobic008G073100 Sobic006G207800 Sobic006G207800 Sobic003G387100--Sobic006G207800 Sobic003G387100--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G387100--Sobic003G412900 Sobic003G387100--Sobic010G035400 Sobic005G063000--Sobic004G211600 Sobic005G204200 Sobic005G204200 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G001700 Sobic005G001700 Sobic005G063000--Sobic005G001700 Sobic003G085100 Sobic003G085100 Sobic005G063000--Sobic003G085100 Sobic005G063000--Sobic003G160800 Sobic005G063000--Sobic010G214100 Sobic005G063000--Sobic007G103400 Sobic010G043800 Sobic010G043800 Sobic005G063000--Sobic010G043800 Sobic001G069000 Sobic001G069000 Sobic009G125400--Sobic001G069000 Sobic004G308700 Sobic004G308700 Sobic009G125400--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic009G125400--Sobic004G272100 Sobic007G004800 Sobic007G004800 Sobic009G125400--Sobic007G004800 Sobic008G021300 Sobic008G021300 Sobic009G125400--Sobic008G021300 Sobic007G009200 Sobic007G009200 Sobic009G125400--Sobic007G009200 Sobic001G102800 Sobic001G102800 Sobic009G125400--Sobic001G102800 Sobic010G201700 Sobic010G201700 Sobic009G125400--Sobic010G201700 Sobic006G272900 Sobic006G272900 Sobic009G125400--Sobic006G272900 Sobic006G210400 Sobic006G210400 Sobic007G085800--Sobic006G210400 Sobic006G010900 Sobic006G010900 Sobic007G085800--Sobic006G010900 Sobic007G085800--Sobic003G412900 Sobic007G085800--Sobic008G116300 Sobic007G085800--Sobic001G069000 Sobic007G085800--Sobic003G387100 Sobic007G085800--Sobic010G214100 Sobic001G168800 Sobic001G168800 Sobic007G085800--Sobic001G168800 Sobic001G186200 Sobic001G186200 Sobic007G085800--Sobic001G186200 Sobic004G211600--Sobic006G101500 Sobic004G211600--Sobic005G063000 Sobic004G211600--Sobic001G183000 Sobic004G211600--Sobic010G214100 Sobic004G211600--Sobic008G006100 Sobic004G211600--Sobic001G134700 Sobic009G062400 Sobic009G062400 Sobic004G211600--Sobic009G062400 Sobic004G298900 Sobic004G298900 Sobic004G211600--Sobic004G298900 Sobic004G211600--Sobic003G160800 Sobic008G116300--Sobic003G387100 Sobic008G116300--Sobic007G085800 Sobic008G116300--Sobic006G101500 Sobic002G036000 Sobic002G036000 Sobic008G116300--Sobic002G036000 Sobic008G116300--Sobic003G412900 Sobic008G116300--Sobic001G069000 Sobic008G116300--Sobic010G214100 Sobic008G116300--Sobic006G010900 Sobic003G077400 Sobic003G077400 Sobic008G116300--Sobic003G077400 Sobic010G005500 Sobic010G005500 Sobic007G052400--Sobic010G005500 Sobic003G002300 Sobic003G002300 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic007G052400--Sobic008G171300 Sobic007G225500 Sobic007G225500 Sobic007G052400--Sobic007G225500 Sobic009G183700 Sobic009G183700 Sobic007G052400--Sobic009G183700 Sobic009G030900 Sobic009G030900 Sobic007G052400--Sobic009G030900 Sobic008G102000 Sobic008G102000 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700
Octagon: transcription factors


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