Gene annotation
Transcriptome id Sobic.005G204200.3,Sobic.005G204200.1
Synonym Sb05g025920, APG3
Functional annotation peptide chain release factor protein, putative, expressed
UniProt C5Y7E5
Pfam PF00472 PF03462
Panther DB PTHR11075 PTHR11075:SF9
NCBI CDD KOG2726; Mitochondrial polypeptide chain release factor
KEGG Orthology K02835; prfA, MTRF1, peptide chain release factor 1
Gene Ontology GO:0006415; translational termination GO:0003747translation release factor activity GO:0016149translation release factor activity, codon specific GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G62910 : Peptide chain release factor 1
RAP-DB (Rice) LOC_Os11g43600.1 : peptide chain release factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a029206
Brachypodium PNT63090 , KQJ87461
Barley HORVU4Hr1G032780.23 , HORVU4Hr1G032780.22 , HORVU4Hr1G032780.21 , HORVU4Hr1G032780.20 , HORVU4Hr1G032760.4 , HORVU4Hr1G032760.5 , HORVU4Hr1G032760.2 , HORVU4Hr1G032760.3 , HORVU4Hr1G032780.16 , HORVU4Hr1G032780.17 , HORVU4Hr1G032780.14 , HORVU4Hr1G032780.15 , HORVU4Hr1G032780.12 , HORVU4Hr1G032780.13 , HORVU4Hr1G032780.10 , HORVU4Hr1G032780.11 , HORVU4Hr1G032780.18 , HORVU4Hr1G032780.19 , HORVU4Hr1G032780.4 , HORVU4Hr1G032780.5 , HORVU4Hr1G032780.6 , HORVU4Hr1G032780.7 , HORVU4Hr1G032780.1 , HORVU4Hr1G032780.2 , HORVU4Hr1G032780.3 , HORVU4Hr1G032780.8 , HORVU4Hr1G032780.9
Wheat TraesCS4A02G168000 , TraesCS4D02G147100 , TraesCS4D02G147100 , TraesCSU02G197500 , TraesCSU02G197500
Populus -


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cDNA sequences
Sobic.005G204200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
3 Sobic.002G220900 expressed protein -
4 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
5 Sobic.003G233700 SET domain-containing protein, putative, expressed -
6 Sobic.010G035400 expressed protein -
7 Sobic.007G103400 expressed protein -
8 Sobic.003G085100 MYB family transcription factor, putative, expressed -
9 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
11 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
12 Sobic.006G101500 expressed protein -
13 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
15 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
16 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
17 Sobic.001G504400 expressed protein -
18 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.003G398800 expressed protein -
20 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic005G204200 Sobic005G204200 Sobic003G160800 Sobic003G160800 Sobic005G204200--Sobic003G160800 Sobic005G063000 Sobic005G063000 Sobic005G204200--Sobic005G063000 Sobic002G220900 Sobic002G220900 Sobic005G204200--Sobic002G220900 Sobic005G001700 Sobic005G001700 Sobic005G204200--Sobic005G001700 Sobic003G233700 Sobic003G233700 Sobic005G204200--Sobic003G233700 Sobic010G035400 Sobic010G035400 Sobic005G204200--Sobic010G035400 Sobic007G103400 Sobic007G103400 Sobic005G204200--Sobic007G103400 Sobic003G085100 Sobic003G085100 Sobic005G204200--Sobic003G085100 Sobic004G336200 Sobic004G336200 Sobic005G204200--Sobic004G336200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G387100 Sobic003G387100 Sobic003G160800--Sobic003G387100 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G160800--Sobic003G233700 Sobic001G134700 Sobic001G134700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic004G211600 Sobic004G211600 Sobic005G063000--Sobic004G211600 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G063000--Sobic005G001700 Sobic005G063000--Sobic003G085100 Sobic005G063000--Sobic003G160800 Sobic010G214100 Sobic010G214100 Sobic005G063000--Sobic010G214100 Sobic005G063000--Sobic007G103400 Sobic010G043800 Sobic010G043800 Sobic005G063000--Sobic010G043800 Sobic003G398800 Sobic003G398800 Sobic002G220900--Sobic003G398800 Sobic008G033000 Sobic008G033000 Sobic002G220900--Sobic008G033000 Sobic002G220900--Sobic007G103400 Sobic001G504400 Sobic001G504400 Sobic002G220900--Sobic001G504400 Sobic007G009200 Sobic007G009200 Sobic002G220900--Sobic007G009200 Sobic009G237100 Sobic009G237100 Sobic002G220900--Sobic009G237100 Sobic003G185900 Sobic003G185900 Sobic002G220900--Sobic003G185900 Sobic002G220900--Sobic005G204200 Sobic002G220900--Sobic010G035400 Sobic008G001900 Sobic008G001900 Sobic005G001700--Sobic008G001900 Sobic005G001700--Sobic002G220900 Sobic005G001700--Sobic005G204200 Sobic010G067100 Sobic010G067100 Sobic005G001700--Sobic010G067100 Sobic005G001700--Sobic005G063000 Sobic005G001700--Sobic003G185900 Sobic002G402700 Sobic002G402700 Sobic005G001700--Sobic002G402700 Sobic003G036200 Sobic003G036200 Sobic005G001700--Sobic003G036200 Sobic005G001700--Sobic007G009200 Sobic003G233700--Sobic007G103400 Sobic003G287900 Sobic003G287900 Sobic003G233700--Sobic003G287900 Sobic004G353100 Sobic004G353100 Sobic003G233700--Sobic004G353100 Sobic002G133900 Sobic002G133900 Sobic003G233700--Sobic002G133900 Sobic009G237000 Sobic009G237000 Sobic003G233700--Sobic009G237000 Sobic003G233700--Sobic003G160800 Sobic008G074000 Sobic008G074000 Sobic003G233700--Sobic008G074000 Sobic003G094350 Sobic003G094350 Sobic003G233700--Sobic003G094350 Sobic001G500600 Sobic001G500600 Sobic003G233700--Sobic001G500600 Sobic010G035400--Sobic007G103400 Sobic007G225500 Sobic007G225500 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic010G035400--Sobic004G353100 Sobic010G035400--Sobic009G237000 Sobic002G275300 Sobic002G275300 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic006G207800 Sobic006G207800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100 Sobic007G103400--Sobic009G237000 Sobic002G298800 Sobic002G298800 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic007G103400--Sobic001G504400 Sobic003G306200 Sobic003G306200 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300 Sobic003G150800 Sobic003G150800 Sobic003G085100--Sobic003G150800 Sobic007G005400 Sobic007G005400 Sobic003G085100--Sobic007G005400 Sobic005G111550 Sobic005G111550 Sobic003G085100--Sobic005G111550 Sobic003G085100--Sobic003G160800 Sobic003G085100--Sobic005G063000 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G085100--Sobic003G287900 Sobic003G085100--Sobic008G001900 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300
Octagon: transcription factors


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