Gene annotation
Transcriptome id Sobic.001G048400.1
Synonym ACD1-LIKE, PTC52, TIC55-IV, Sb01g004440
Functional annotation pheophorbide a oxygenase, chloroplast precursor, putative, expressed
UniProt C5WW66 , C6JRQ5
Pfam PF00355 PF08417
Panther DB PTHR21266 PTHR21266:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0010277chlorophyllide a oxygenase [overall] activity


Orthologs (automatic annotation)
TAIR AT4G25650 : ACD1-like
RAP-DB (Rice) LOC_Os03g59110.1 : pheophorbide a oxygenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a008645
Brachypodium KQK12598
Barley HORVU7Hr1G028370.2 , HORVU7Hr1G028370.4 , HORVU7Hr1G028370.5 , HORVU7Hr1G028370.1 , HORVU7Hr1G028370.9 , HORVU7Hr1G028370.8 , HORVU5Hr1G109470.8 , HORVU5Hr1G109470.9 , HORVU5Hr1G109470.2 , HORVU5Hr1G109470.3 , HORVU7Hr1G028370.3 , HORVU5Hr1G109470.1 , HORVU5Hr1G109470.6 , HORVU5Hr1G109470.7 , HORVU5Hr1G109470.4 , HORVU5Hr1G109470.5 , HORVU7Hr1G028370.7 , HORVU7Hr1G028370.6 , HORVU5Hr1G109470.18 , HORVU5Hr1G109470.19 , HORVU5Hr1G109470.10 , HORVU5Hr1G109470.11 , HORVU5Hr1G109470.12 , HORVU5Hr1G109470.13 , HORVU5Hr1G109470.14 , HORVU5Hr1G109470.15 , HORVU5Hr1G109470.16 , HORVU5Hr1G109470.17
Wheat TraesCS5D02G466600 , TraesCS5A02G456000 , TraesCS5A02G456000 , TraesCS7A02G137000 , TraesCS7A02G137000 , TraesCS7A02G137000 , TraesCS7D02G137200 , TraesCS7D02G137200 , TraesCS5B02G465000 , TraesCS5D02G466800 , TraesCS5D02G466800 , TraesCS7B02G038100 , TraesCS5A02G455800 , TraesCS5A02G455800 , TraesCS7B02G038300 , TraesCS7B02G038300 , TraesCS5D02G466800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G398800 expressed protein -
2 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
3 Sobic.007G103400 expressed protein -
4 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
5 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
6 Sobic.001G504400 expressed protein -
7 Sobic.009G121000 expressed protein -
8 Sobic.006G101500 expressed protein -
9 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
11 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
12 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
13 Sobic.010G035400 expressed protein -
14 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
15 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
16 Sobic.002G220900 expressed protein -
17 Sobic.007G150100 HD domain containing protein, putative, expressed -
18 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.003G306200 hemimethylated DNA binding domain containing protein, expressed -
20 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G048400 Sobic001G048400 Sobic003G398800 Sobic003G398800 Sobic001G048400--Sobic003G398800 Sobic009G056700 Sobic009G056700 Sobic001G048400--Sobic009G056700 Sobic007G103400 Sobic007G103400 Sobic001G048400--Sobic007G103400 Sobic003G431700 Sobic003G431700 Sobic001G048400--Sobic003G431700 Sobic010G043800 Sobic010G043800 Sobic001G048400--Sobic010G043800 Sobic001G504400 Sobic001G504400 Sobic001G048400--Sobic001G504400 Sobic009G121000 Sobic009G121000 Sobic001G048400--Sobic009G121000 Sobic006G101500 Sobic006G101500 Sobic001G048400--Sobic006G101500 Sobic006G238200 Sobic006G238200 Sobic001G048400--Sobic006G238200 Sobic003G398800--Sobic006G238200 Sobic003G306200 Sobic003G306200 Sobic003G398800--Sobic003G306200 Sobic003G398800--Sobic009G056700 Sobic007G009200 Sobic007G009200 Sobic003G398800--Sobic007G009200 Sobic003G398800--Sobic007G103400 Sobic009G129300 Sobic009G129300 Sobic003G398800--Sobic009G129300 Sobic002G220900 Sobic002G220900 Sobic003G398800--Sobic002G220900 Sobic003G398800--Sobic003G431700 Sobic001G491000 Sobic001G491000 Sobic003G398800--Sobic001G491000 Sobic009G056700--Sobic003G398800 Sobic009G056700--Sobic003G431700 Sobic002G112400 Sobic002G112400 Sobic009G056700--Sobic002G112400 Sobic009G056700--Sobic007G103400 Sobic009G056700--Sobic003G306200 Sobic008G006100 Sobic008G006100 Sobic009G056700--Sobic008G006100 Sobic002G275300 Sobic002G275300 Sobic009G056700--Sobic002G275300 Sobic002G298800 Sobic002G298800 Sobic009G056700--Sobic002G298800 Sobic001G128600 Sobic001G128600 Sobic009G056700--Sobic001G128600 Sobic009G237000 Sobic009G237000 Sobic007G103400--Sobic009G237000 Sobic007G103400--Sobic002G298800 Sobic004G353100 Sobic004G353100 Sobic007G103400--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic007G103400--Sobic010G035400 Sobic007G103400--Sobic001G504400 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic003G233700 Sobic003G233700 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300 Sobic001G519800 Sobic001G519800 Sobic003G431700--Sobic001G519800 Sobic003G431700--Sobic003G398800 Sobic006G207800 Sobic006G207800 Sobic003G431700--Sobic006G207800 Sobic002G370600 Sobic002G370600 Sobic003G431700--Sobic002G370600 Sobic003G431700--Sobic006G238200 Sobic004G308700 Sobic004G308700 Sobic003G431700--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic003G431700--Sobic004G272100 Sobic010G181300 Sobic010G181300 Sobic003G431700--Sobic010G181300 Sobic001G102800 Sobic001G102800 Sobic003G431700--Sobic001G102800 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic010G043800--Sobic001G504400 Sobic006G142600 Sobic006G142600 Sobic010G043800--Sobic006G142600 Sobic010G002700 Sobic010G002700 Sobic010G043800--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic010G043800--Sobic006G158100 Sobic010G043800--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic010G043800--Sobic001G169900 Sobic001G378100 Sobic001G378100 Sobic010G043800--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic003G185900 Sobic003G185900 Sobic001G504400--Sobic003G185900 Sobic001G258200 Sobic001G258200 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic008G033000 Sobic008G033000 Sobic001G504400--Sobic008G033000 Sobic001G180200 Sobic001G180200 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic009G121000--Sobic006G142600 Sobic003G160800 Sobic003G160800 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic009G121000--Sobic007G103400 Sobic009G121000--Sobic010G002700 Sobic003G387100 Sobic003G387100 Sobic006G101500--Sobic003G387100 Sobic002G102200 Sobic002G102200 Sobic006G101500--Sobic002G102200 Sobic001G183000 Sobic001G183000 Sobic006G101500--Sobic001G183000 Sobic004G211600 Sobic004G211600 Sobic006G101500--Sobic004G211600 Sobic001G134700 Sobic001G134700 Sobic006G101500--Sobic001G134700 Sobic006G101500--Sobic003G431700 Sobic003G412900 Sobic003G412900 Sobic006G101500--Sobic003G412900 Sobic006G093900 Sobic006G093900 Sobic006G101500--Sobic006G093900 Sobic006G101500--Sobic008G006100 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic006G238200--Sobic001G100000 Sobic009G237100 Sobic009G237100 Sobic006G238200--Sobic009G237100 Sobic006G238200--Sobic003G398800 Sobic001G289500 Sobic001G289500 Sobic006G238200--Sobic001G289500 Sobic006G238200--Sobic002G370600 Sobic007G225500 Sobic007G225500 Sobic006G238200--Sobic007G225500
Octagon: transcription factors


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