Gene annotation
Transcriptome id Sobic.008G052900.1
Synonym Sb08g004470
Functional annotation CBS domain-containing protein, putative, expressed
UniProt C5YSP4
Pfam PF00564 PF00571
Panther DB PTHR13780 PTHR13780:SF48
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G52950 : CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
RAP-DB (Rice) LOC_Os12g07190.1 : CBS domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033978 , Zm00025a012868 , Zm00025a004131 , Zm00025a026240
Brachypodium KQJ89233 , KQJ89231 , KQJ89232 , KQJ92069 , KQJ92068
Barley HORVU5Hr1G036160.8 , HORVU5Hr1G036160.12 , HORVU5Hr1G036160.11 , HORVU5Hr1G036160.5 , HORVU5Hr1G036160.4 , HORVU5Hr1G036160.7 , HORVU5Hr1G036160.6 , HORVU5Hr1G036160.1 , HORVU5Hr1G036160.3 , HORVU5Hr1G036160.2 , HORVU5Hr1G036160.15 , HORVU5Hr1G036160.9 , HORVU5Hr1G036160.14 , HORVU5Hr1G036160.10 , HORVU5Hr1G036160.13 , HORVU5Hr1G036160.17 , HORVU5Hr1G036160.16 , HORVU5Hr1G036160.18
Wheat TraesCS4B02G110100 , TraesCS4B02G110100 , TraesCS4D02G107800 , TraesCS5D02G130200 , TraesCS5D02G130200 , TraesCS5B02G117400 , TraesCS5B02G117400 , TraesCS5A02G118800 , TraesCS4A02G206600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
2 Sobic.004G268300 phosphatase, putative, expressed -
3 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
4 Sobic.009G207900 expressed protein -
5 Sobic.009G038701 - -
6 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
7 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
8 Sobic.001G504400 expressed protein -
9 Sobic.006G212800 expressed protein -
10 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
11 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
12 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -
13 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
14 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4
15 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
17 Sobic.003G306600 acetamidase, putative, expressed K01455: formamidase
18 Sobic.005G179300 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.001G536700 expressed protein -
20 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -


Gene co-expression network
sample Sobic008G052900 Sobic008G052900 Sobic009G219100 Sobic009G219100 Sobic008G052900--Sobic009G219100 Sobic004G268300 Sobic004G268300 Sobic008G052900--Sobic004G268300 Sobic002G206300 Sobic002G206300 Sobic008G052900--Sobic002G206300 Sobic009G207900 Sobic009G207900 Sobic008G052900--Sobic009G207900 Sobic009G038701 Sobic009G038701 Sobic008G052900--Sobic009G038701 Sobic001G180200 Sobic001G180200 Sobic008G052900--Sobic001G180200 Sobic010G067100 Sobic010G067100 Sobic008G052900--Sobic010G067100 Sobic001G504400 Sobic001G504400 Sobic008G052900--Sobic001G504400 Sobic006G212800 Sobic006G212800 Sobic008G052900--Sobic006G212800 Sobic004G154400 Sobic004G154400 Sobic009G219100--Sobic004G154400 Sobic009G219100--Sobic009G207900 Sobic009G062400 Sobic009G062400 Sobic009G219100--Sobic009G062400 Sobic009G237000 Sobic009G237000 Sobic009G219100--Sobic009G237000 Sobic008G074000 Sobic008G074000 Sobic009G219100--Sobic008G074000 Sobic009G219100--Sobic001G504400 Sobic009G093100 Sobic009G093100 Sobic009G219100--Sobic009G093100 Sobic009G219100--Sobic002G206300 Sobic005G179300 Sobic005G179300 Sobic009G219100--Sobic005G179300 Sobic004G268300--Sobic008G052900 Sobic004G268300--Sobic002G206300 Sobic004G268300--Sobic009G219100 Sobic004G151500 Sobic004G151500 Sobic004G268300--Sobic004G151500 Sobic002G402700 Sobic002G402700 Sobic004G268300--Sobic002G402700 Sobic004G268300--Sobic008G074000 Sobic003G306600 Sobic003G306600 Sobic004G268300--Sobic003G306600 Sobic004G268300--Sobic001G504400 Sobic001G540600 Sobic001G540600 Sobic004G268300--Sobic001G540600 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic002G206300--Sobic001G180200 Sobic001G536700 Sobic001G536700 Sobic002G206300--Sobic001G536700 Sobic002G206300--Sobic009G207900 Sobic001G258200 Sobic001G258200 Sobic002G206300--Sobic001G258200 Sobic008G129900 Sobic008G129900 Sobic002G206300--Sobic008G129900 Sobic001G217900 Sobic001G217900 Sobic002G206300--Sobic001G217900 Sobic003G341300 Sobic003G341300 Sobic002G206300--Sobic003G341300 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic009G207900--Sobic002G206300 Sobic009G207900--Sobic001G504400 Sobic009G207900--Sobic009G219100 Sobic007G135800 Sobic007G135800 Sobic009G207900--Sobic007G135800 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G207900--Sobic009G062400 Sobic009G038701--Sobic002G206300 Sobic010G125833 Sobic010G125833 Sobic009G038701--Sobic010G125833 Sobic009G038701--Sobic001G504400 Sobic009G038701--Sobic001G180200 Sobic009G038701--Sobic001G258200 Sobic003G185900 Sobic003G185900 Sobic009G038701--Sobic003G185900 Sobic009G038701--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic009G038701--Sobic008G033000 Sobic009G038701--Sobic009G207900 Sobic001G180200--Sobic003G341300 Sobic001G180200--Sobic002G206300 Sobic001G180200--Sobic007G135800 Sobic001G180200--Sobic009G038701 Sobic001G180200--Sobic009G207900 Sobic003G094100 Sobic003G094100 Sobic001G180200--Sobic003G094100 Sobic001G180200--Sobic001G504400 Sobic001G263100 Sobic001G263100 Sobic001G180200--Sobic001G263100 Sobic002G162400 Sobic002G162400 Sobic001G180200--Sobic002G162400 Sobic010G067100--Sobic003G185900 Sobic010G067100--Sobic001G504400 Sobic003G398800 Sobic003G398800 Sobic010G067100--Sobic003G398800 Sobic010G067100--Sobic001G258200 Sobic007G105500 Sobic007G105500 Sobic010G067100--Sobic007G105500 Sobic006G158100 Sobic006G158100 Sobic010G067100--Sobic006G158100 Sobic010G067100--Sobic002G206300 Sobic010G067100--Sobic009G038701 Sobic010G067100--Sobic008G033000 Sobic001G504400--Sobic002G206300 Sobic007G103400 Sobic007G103400 Sobic001G504400--Sobic007G103400 Sobic001G504400--Sobic009G038701 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic001G504400--Sobic010G125833 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G378100 Sobic001G378100 Sobic001G504400--Sobic001G378100 Sobic006G212800--Sobic009G207900 Sobic001G077300 Sobic001G077300 Sobic006G212800--Sobic001G077300 Sobic006G212800--Sobic001G180200 Sobic006G212800--Sobic007G135800 Sobic006G212800--Sobic002G206300 Sobic009G073900 Sobic009G073900 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic006G212800--Sobic005G179300 Sobic006G212800--Sobic002G162400
Octagon: transcription factors


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