Gene annotation
Transcriptome id Sobic.005G179300.1
Synonym GCN5, ATGCN5, Sb05g023860
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5Y5W8
Pfam PF12848 PF00005
Panther DB PTHR19211 PTHR19211:SF48
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G64840 : general control non-repressible 5
RAP-DB (Rice) LOC_Os11g39020.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a015865
Brachypodium KQJ87875
Barley HORVU0Hr1G008550.4 , HORVU0Hr1G008550.1 , HORVU0Hr1G008550.2 , HORVU0Hr1G008550.3
Wheat TraesCS4A02G156300 , TraesCS4A02G156300 , TraesCS4B02G160600 , TraesCS4B02G160600 , TraesCS4B02G160600 , TraesCS4D02G149400 , TraesCS4D02G149400
Populus -


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cDNA sequences
Sobic.005G179300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
2 Sobic.001G077300 thioredoxin, putative, expressed -
3 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
4 Sobic.006G212800 expressed protein -
5 Sobic.009G207900 expressed protein -
6 Sobic.001G207800 integral membrane protein, putative, expressed -
7 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
8 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
9 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
11 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
12 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
13 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
14 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
15 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
16 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
17 Sobic.001G359300 cytochrome P450, putative, expressed -
18 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
19 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
20 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2


Gene co-expression network
sample Sobic005G179300 Sobic005G179300 Sobic006G090100 Sobic006G090100 Sobic005G179300--Sobic006G090100 Sobic001G077300 Sobic001G077300 Sobic005G179300--Sobic001G077300 Sobic003G073800 Sobic003G073800 Sobic005G179300--Sobic003G073800 Sobic006G212800 Sobic006G212800 Sobic005G179300--Sobic006G212800 Sobic009G207900 Sobic009G207900 Sobic005G179300--Sobic009G207900 Sobic001G207800 Sobic001G207800 Sobic005G179300--Sobic001G207800 Sobic009G219100 Sobic009G219100 Sobic005G179300--Sobic009G219100 Sobic004G271600 Sobic004G271600 Sobic005G179300--Sobic004G271600 Sobic002G081400 Sobic002G081400 Sobic005G179300--Sobic002G081400 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic006G090100--Sobic001G509200 Sobic009G073900 Sobic009G073900 Sobic006G090100--Sobic009G073900 Sobic002G382700 Sobic002G382700 Sobic006G090100--Sobic002G382700 Sobic003G341300 Sobic003G341300 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic006G090100--Sobic002G081400 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic001G378100 Sobic001G378100 Sobic003G073800--Sobic001G378100 Sobic003G073800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic003G073800--Sobic001G180200 Sobic003G073800--Sobic009G207900 Sobic001G536700 Sobic001G536700 Sobic003G073800--Sobic001G536700 Sobic003G073800--Sobic009G073900 Sobic003G073800--Sobic006G090100 Sobic007G058100 Sobic007G058100 Sobic003G073800--Sobic007G058100 Sobic002G206300 Sobic002G206300 Sobic003G073800--Sobic002G206300 Sobic006G212800--Sobic009G207900 Sobic006G212800--Sobic001G077300 Sobic006G212800--Sobic001G180200 Sobic007G135800 Sobic007G135800 Sobic006G212800--Sobic007G135800 Sobic006G212800--Sobic002G206300 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic006G212800--Sobic005G179300 Sobic002G162400 Sobic002G162400 Sobic006G212800--Sobic002G162400 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic009G207900--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic009G207900--Sobic001G504400 Sobic009G207900--Sobic009G219100 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic009G207900--Sobic003G073800 Sobic009G062400 Sobic009G062400 Sobic009G207900--Sobic009G062400 Sobic001G207800--Sobic006G090100 Sobic001G207800--Sobic001G283100 Sobic001G207800--Sobic002G382700 Sobic001G207800--Sobic001G509200 Sobic001G207800--Sobic001G077300 Sobic007G108900 Sobic007G108900 Sobic001G207800--Sobic007G108900 Sobic001G207800--Sobic009G073900 Sobic001G207800--Sobic003G341300 Sobic007G157300 Sobic007G157300 Sobic001G207800--Sobic007G157300 Sobic004G154400 Sobic004G154400 Sobic009G219100--Sobic004G154400 Sobic009G219100--Sobic009G207900 Sobic009G219100--Sobic009G062400 Sobic009G237000 Sobic009G237000 Sobic009G219100--Sobic009G237000 Sobic008G074000 Sobic008G074000 Sobic009G219100--Sobic008G074000 Sobic009G219100--Sobic001G504400 Sobic009G219100--Sobic009G093100 Sobic009G219100--Sobic002G206300 Sobic009G219100--Sobic005G179300 Sobic004G271600--Sobic002G132400 Sobic004G271600--Sobic002G081400 Sobic010G100900 Sobic010G100900 Sobic004G271600--Sobic010G100900 Sobic002G351200 Sobic002G351200 Sobic004G271600--Sobic002G351200 Sobic007G124500 Sobic007G124500 Sobic004G271600--Sobic007G124500 Sobic002G072500 Sobic002G072500 Sobic004G271600--Sobic002G072500 Sobic004G271600--Sobic006G090100 Sobic004G271600--Sobic001G509200 Sobic002G060800 Sobic002G060800 Sobic004G271600--Sobic002G060800 Sobic004G317700 Sobic004G317700 Sobic002G081400--Sobic004G317700 Sobic002G081400--Sobic004G271600 Sobic002G081400--Sobic009G073900 Sobic002G081400--Sobic001G077300 Sobic002G081400--Sobic003G003450 Sobic002G081400--Sobic006G090100 Sobic002G081400--Sobic001G509200 Sobic002G081400--Sobic007G124500 Sobic009G170200 Sobic009G170200 Sobic002G081400--Sobic009G170200
Octagon: transcription factors


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