Gene annotation
Transcriptome id Sobic.001G413000.2,Sobic.001G413000.3,Sobic.001G413000.4
Synonym Sb01g038917, MRP3, ATMRP3
Functional annotation ABC transporter family protein, putative, expressed
UniProt A0A1Z5SA41 , A0A1Z5SA42
Pfam PF00005 PF00664 PF00664 PF00005
Panther DB PTHR24223 PTHR24223:SF181
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0016021integral component of membrane GO:0006810transport GO:0005524ATP binding GO:0016887ATPase activity


Orthologs (automatic annotation)
TAIR AT3G13080 : multidrug resistance-associated protein 3
RAP-DB (Rice) LOC_Os01g07870.1 : ABC transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a035729 , Zm00025a053348
Brachypodium PNT73184 , PNT73183 , PNT65236 , KQK02942
Barley HORVU3Hr1G085890.10 , HORVU3Hr1G085890.13 , HORVU3Hr1G085890.12 , HORVU3Hr1G085890.14 , HORVU3Hr1G085890.17 , HORVU3Hr1G024210.6 , HORVU3Hr1G024210.7 , HORVU3Hr1G024210.4 , HORVU3Hr1G024210.5 , HORVU3Hr1G024210.2 , HORVU3Hr1G024210.3 , HORVU3Hr1G024210.1 , HORVU3Hr1G024210.8 , HORVU3Hr1G024210.9 , HORVU3Hr1G085890.11 , HORVU3Hr1G085890.15 , HORVU3Hr1G085890.9 , HORVU3Hr1G085890.8 , HORVU3Hr1G085890.5 , HORVU3Hr1G085890.4 , HORVU3Hr1G085890.7 , HORVU3Hr1G085890.6 , HORVU3Hr1G085890.1 , HORVU3Hr1G085890.3 , HORVU3Hr1G085890.2 , HORVU3Hr1G024210.10
Wheat TraesCS4A02G051100 , TraesCS3A02G129000 , TraesCS3D02G129900 , TraesCS3D02G129900 , TraesCS3D02G356300 , TraesCS3D02G356300 , TraesCS4D02G253300 , TraesCS3A02G362500 , TraesCS4D02G253300 , TraesCS4D02G253300 , TraesCS3B02G395000 , TraesCS3B02G395000 , TraesCS4B02G253200 , TraesCS3B02G148100 , TraesCS3B02G148100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
2 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
3 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
4 Sobic.007G090403 - -
5 Sobic.003G080700 Ser/Thr protein kinase, putative, expressed -
6 Sobic.005G179300 ABC transporter, ATP-binding protein, putative, expressed -
7 Sobic.009G082000 TKL_IRAK_DUF26-lc.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
8 Sobic.003G160100 - -
9 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
10 Sobic.003G190100 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
11 Sobic.002G390500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pyruvate dehydrogenase kinase(PubMedID : 27016024)@kinase, putative, expressed K00898: pyruvate dehydrogenase kinase 2/3/4
12 Sobic.002G017500 expressed protein -
13 Sobic.006G212800 expressed protein -
14 Sobic.001G223550 - -
15 Sobic.005G075100 rp3 protein, putative, expressed -
16 Sobic.002G072100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine protease 1 precursor, putative, expressed -
18 Sobic.006G243800 OsWAK55 - OsWAK receptor-like protein kinase, expressed -
19 Sobic.003G203300 stress regulated protein, putative, expressed -
20 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -


Gene co-expression network
sample Sobic001G413000 Sobic001G413000 Sobic002G173100 Sobic002G173100 Sobic001G413000--Sobic002G173100 Sobic006G259600 Sobic006G259600 Sobic001G413000--Sobic006G259600 Sobic001G243200 Sobic001G243200 Sobic001G413000--Sobic001G243200 Sobic007G090403 Sobic007G090403 Sobic001G413000--Sobic007G090403 Sobic003G080700 Sobic003G080700 Sobic001G413000--Sobic003G080700 Sobic005G179300 Sobic005G179300 Sobic001G413000--Sobic005G179300 Sobic009G082000 Sobic009G082000 Sobic001G413000--Sobic009G082000 Sobic003G160100 Sobic003G160100 Sobic001G413000--Sobic003G160100 Sobic009G219100 Sobic009G219100 Sobic001G413000--Sobic009G219100 Sobic003G190100 Sobic003G190100 Sobic002G173100--Sobic003G190100 Sobic003G108900 Sobic003G108900 Sobic002G173100--Sobic003G108900 Sobic003G203300 Sobic003G203300 Sobic002G173100--Sobic003G203300 Sobic001G060500 Sobic001G060500 Sobic002G173100--Sobic001G060500 Sobic003G190000 Sobic003G190000 Sobic002G173100--Sobic003G190000 Sobic005G075100 Sobic005G075100 Sobic002G173100--Sobic005G075100 Sobic004G271600 Sobic004G271600 Sobic002G173100--Sobic004G271600 Sobic002G173100--Sobic005G179300 Sobic004G300000 Sobic004G300000 Sobic002G173100--Sobic004G300000 Sobic006G090100 Sobic006G090100 Sobic006G259600--Sobic006G090100 Sobic001G207800 Sobic001G207800 Sobic006G259600--Sobic001G207800 Sobic003G166200 Sobic003G166200 Sobic006G259600--Sobic003G166200 Sobic002G081400 Sobic002G081400 Sobic006G259600--Sobic002G081400 Sobic006G212800 Sobic006G212800 Sobic006G259600--Sobic006G212800 Sobic009G073900 Sobic009G073900 Sobic006G259600--Sobic009G073900 Sobic001G509200 Sobic001G509200 Sobic006G259600--Sobic001G509200 Sobic006G259600--Sobic001G243200 Sobic001G077300 Sobic001G077300 Sobic006G259600--Sobic001G077300 Sobic009G093100 Sobic009G093100 Sobic001G243200--Sobic009G093100 Sobic001G243200--Sobic006G259600 Sobic006G065100 Sobic006G065100 Sobic001G243200--Sobic006G065100 Sobic001G333800 Sobic001G333800 Sobic001G243200--Sobic001G333800 Sobic001G133000 Sobic001G133000 Sobic001G243200--Sobic001G133000 Sobic001G243200--Sobic003G166200 Sobic006G219600 Sobic006G219600 Sobic001G243200--Sobic006G219600 Sobic002G129400 Sobic002G129400 Sobic001G243200--Sobic002G129400 Sobic001G243200--Sobic001G077300 Sobic005G068700 Sobic005G068700 Sobic007G090403--Sobic005G068700 Sobic002G244200 Sobic002G244200 Sobic007G090403--Sobic002G244200 Sobic007G090403--Sobic006G219600 Sobic001G062900 Sobic001G062900 Sobic007G090403--Sobic001G062900 Sobic005G149200 Sobic005G149200 Sobic007G090403--Sobic005G149200 Sobic007G090403--Sobic001G133000 Sobic009G123900 Sobic009G123900 Sobic007G090403--Sobic009G123900 Sobic007G090403--Sobic006G065100 Sobic009G215500 Sobic009G215500 Sobic007G090403--Sobic009G215500 Sobic002G017500 Sobic002G017500 Sobic003G080700--Sobic002G017500 Sobic003G080700--Sobic005G179300 Sobic003G080700--Sobic001G413000 Sobic003G080700--Sobic001G243200 Sobic003G080700--Sobic002G244200 Sobic002G390500 Sobic002G390500 Sobic003G080700--Sobic002G390500 Sobic010G131700 Sobic010G131700 Sobic003G080700--Sobic010G131700 Sobic003G080700--Sobic003G190100 Sobic003G416000 Sobic003G416000 Sobic003G080700--Sobic003G416000 Sobic005G179300--Sobic006G090100 Sobic005G179300--Sobic001G077300 Sobic003G073800 Sobic003G073800 Sobic005G179300--Sobic003G073800 Sobic005G179300--Sobic006G212800 Sobic009G207900 Sobic009G207900 Sobic005G179300--Sobic009G207900 Sobic005G179300--Sobic001G207800 Sobic005G179300--Sobic009G219100 Sobic005G179300--Sobic004G271600 Sobic005G179300--Sobic002G081400 Sobic009G082000--Sobic001G413000 Sobic008G081300 Sobic008G081300 Sobic009G082000--Sobic008G081300 Sobic010G196500 Sobic010G196500 Sobic009G082000--Sobic010G196500 Sobic009G082000--Sobic005G075100 Sobic002G001000 Sobic002G001000 Sobic009G082000--Sobic002G001000 Sobic001G081200 Sobic001G081200 Sobic009G082000--Sobic001G081200 Sobic003G086900 Sobic003G086900 Sobic009G082000--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic009G082000--Sobic002G193100 Sobic002G339300 Sobic002G339300 Sobic009G082000--Sobic002G339300 Sobic005G095000 Sobic005G095000 Sobic003G160100--Sobic005G095000 Sobic004G086150 Sobic004G086150 Sobic003G160100--Sobic004G086150 Sobic004G006800 Sobic004G006800 Sobic003G160100--Sobic004G006800 Sobic009G248801 Sobic009G248801 Sobic003G160100--Sobic009G248801 Sobic003G160100--Sobic002G244200 Sobic002G379750 Sobic002G379750 Sobic003G160100--Sobic002G379750 Sobic003G160100--Sobic007G090403 Sobic005G133600 Sobic005G133600 Sobic003G160100--Sobic005G133600 Sobic007G133000 Sobic007G133000 Sobic003G160100--Sobic007G133000 Sobic004G154400 Sobic004G154400 Sobic009G219100--Sobic004G154400 Sobic009G219100--Sobic009G207900 Sobic009G062400 Sobic009G062400 Sobic009G219100--Sobic009G062400 Sobic009G237000 Sobic009G237000 Sobic009G219100--Sobic009G237000 Sobic008G074000 Sobic008G074000 Sobic009G219100--Sobic008G074000 Sobic001G504400 Sobic001G504400 Sobic009G219100--Sobic001G504400 Sobic009G219100--Sobic009G093100 Sobic002G206300 Sobic002G206300 Sobic009G219100--Sobic002G206300 Sobic009G219100--Sobic005G179300
Octagon: transcription factors


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