Gene annotation
Transcriptome id Sobic.003G160100.2,Sobic.003G160100.1
Synonym
Functional annotation -
UniProt A0A1B6Q3I4 , A0A1B6Q3H5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G095000 -(PubMedID : 22050783)@-(PubMedID : 25928459)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
2 Sobic.004G086150 - -
3 Sobic.004G006800 expressed protein -
4 Sobic.009G248801 - -
5 Sobic.002G244200 nucleolar GTP-binding protein 1, putative, expressed -
6 Sobic.002G379750 - -
7 Sobic.007G090403 - -
8 Sobic.005G133600 - -
9 Sobic.007G133000 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
10 Sobic.008G166550 - -
11 Sobic.010G131700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCttP3 - Putative C-terminal processing peptidase homologue, expressed -
12 Sobic.001G413000 ABC transporter family protein, putative, expressed -
13 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
15 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
16 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
18 Sobic.006G235300 expressed protein -
19 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
20 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -


Gene co-expression network
sample Sobic003G160100 Sobic003G160100 Sobic005G095000 Sobic005G095000 Sobic003G160100--Sobic005G095000 Sobic004G086150 Sobic004G086150 Sobic003G160100--Sobic004G086150 Sobic004G006800 Sobic004G006800 Sobic003G160100--Sobic004G006800 Sobic009G248801 Sobic009G248801 Sobic003G160100--Sobic009G248801 Sobic002G244200 Sobic002G244200 Sobic003G160100--Sobic002G244200 Sobic002G379750 Sobic002G379750 Sobic003G160100--Sobic002G379750 Sobic007G090403 Sobic007G090403 Sobic003G160100--Sobic007G090403 Sobic005G133600 Sobic005G133600 Sobic003G160100--Sobic005G133600 Sobic007G133000 Sobic007G133000 Sobic003G160100--Sobic007G133000 Sobic009G194500 Sobic009G194500 Sobic005G095000--Sobic009G194500 Sobic010G131700 Sobic010G131700 Sobic005G095000--Sobic010G131700 Sobic005G095000--Sobic003G160100 Sobic002G119100 Sobic002G119100 Sobic005G095000--Sobic002G119100 Sobic006G235300 Sobic006G235300 Sobic005G095000--Sobic006G235300 Sobic005G095000--Sobic002G244200 Sobic004G127800 Sobic004G127800 Sobic005G095000--Sobic004G127800 Sobic009G100700 Sobic009G100700 Sobic005G095000--Sobic009G100700 Sobic005G095000--Sobic004G086150 Sobic004G086150--Sobic009G248801 Sobic004G086150--Sobic003G160100 Sobic004G086150--Sobic002G244200 Sobic004G086150--Sobic005G095000 Sobic002G196600 Sobic002G196600 Sobic004G086150--Sobic002G196600 Sobic005G068700 Sobic005G068700 Sobic004G086150--Sobic005G068700 Sobic009G123900 Sobic009G123900 Sobic004G086150--Sobic009G123900 Sobic004G086150--Sobic007G090403 Sobic004G175400 Sobic004G175400 Sobic004G086150--Sobic004G175400 Sobic004G006800--Sobic002G379750 Sobic004G006800--Sobic004G127800 Sobic004G006800--Sobic006G235300 Sobic004G006800--Sobic003G160100 Sobic006G065100 Sobic006G065100 Sobic004G006800--Sobic006G065100 Sobic004G322600 Sobic004G322600 Sobic004G006800--Sobic004G322600 Sobic001G077300 Sobic001G077300 Sobic004G006800--Sobic001G077300 Sobic004G006800--Sobic009G194500 Sobic004G006800--Sobic002G119100 Sobic009G248801--Sobic004G086150 Sobic009G248801--Sobic002G244200 Sobic009G248801--Sobic003G160100 Sobic009G248801--Sobic005G095000 Sobic007G202300 Sobic007G202300 Sobic009G248801--Sobic007G202300 Sobic009G248801--Sobic005G133600 Sobic008G101100 Sobic008G101100 Sobic009G248801--Sobic008G101100 Sobic009G248801--Sobic007G090403 Sobic008G166550 Sobic008G166550 Sobic009G248801--Sobic008G166550 Sobic002G244200--Sobic009G248801 Sobic002G244200--Sobic005G095000 Sobic002G244200--Sobic008G166550 Sobic002G244200--Sobic007G090403 Sobic002G244200--Sobic007G133000 Sobic002G244200--Sobic003G160100 Sobic002G244200--Sobic004G086150 Sobic002G244200--Sobic007G202300 Sobic003G416000 Sobic003G416000 Sobic002G244200--Sobic003G416000 Sobic002G379750--Sobic004G006800 Sobic002G379750--Sobic004G127800 Sobic002G379750--Sobic003G160100 Sobic002G124600 Sobic002G124600 Sobic002G379750--Sobic002G124600 Sobic002G379750--Sobic006G235300 Sobic002G379750--Sobic006G065100 Sobic002G379750--Sobic005G095000 Sobic004G312600 Sobic004G312600 Sobic002G379750--Sobic004G312600 Sobic006G219600 Sobic006G219600 Sobic002G379750--Sobic006G219600 Sobic007G090403--Sobic005G068700 Sobic007G090403--Sobic002G244200 Sobic007G090403--Sobic006G219600 Sobic001G062900 Sobic001G062900 Sobic007G090403--Sobic001G062900 Sobic005G149200 Sobic005G149200 Sobic007G090403--Sobic005G149200 Sobic001G133000 Sobic001G133000 Sobic007G090403--Sobic001G133000 Sobic007G090403--Sobic009G123900 Sobic007G090403--Sobic006G065100 Sobic009G215500 Sobic009G215500 Sobic007G090403--Sobic009G215500 Sobic001G223550 Sobic001G223550 Sobic005G133600--Sobic001G223550 Sobic005G133600--Sobic009G248801 Sobic005G133600--Sobic008G101100 Sobic004G253700 Sobic004G253700 Sobic005G133600--Sobic004G253700 Sobic005G133600--Sobic003G160100 Sobic007G185300 Sobic007G185300 Sobic005G133600--Sobic007G185300 Sobic005G133600--Sobic007G090403 Sobic007G010700 Sobic007G010700 Sobic005G133600--Sobic007G010700 Sobic005G133600--Sobic005G095000 Sobic010G231300 Sobic010G231300 Sobic007G133000--Sobic010G231300 Sobic001G217900 Sobic001G217900 Sobic007G133000--Sobic001G217900 Sobic001G263100 Sobic001G263100 Sobic007G133000--Sobic001G263100 Sobic010G125833 Sobic010G125833 Sobic007G133000--Sobic010G125833 Sobic007G133000--Sobic005G068700 Sobic001G540600 Sobic001G540600 Sobic007G133000--Sobic001G540600 Sobic002G206300 Sobic002G206300 Sobic007G133000--Sobic002G206300 Sobic001G180200 Sobic001G180200 Sobic007G133000--Sobic001G180200 Sobic006G235400 Sobic006G235400 Sobic007G133000--Sobic006G235400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.