Gene annotation
| Transcriptome id | Sobic.005G095000.1 |
|---|---|
| Synonym | RPM1, R gene homologue, RPS3, Sb05g008250, St3A;St3A |
| Functional annotation | - (PubMedID : 22050783) - (PubMedID : 25928459) disease resistance protein RPM1, putative, expressed |
| UniProt | A0A1Z5RHK0 |
| Pfam | PF00931 |
| Panther DB | PTHR23155 PTHR23155:SF624 |
| NCBI CDD | KOG4658; Apoptotic ATPase |
| KEGG Orthology | K13457; RPM1, disease resistance protein RPM1 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G07040 : NB-ARC domain-containing disease resistance protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g11770.1 : disease resistance protein RPM1, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G194500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.010G131700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCttP3 - Putative C-terminal processing peptidase homologue, expressed | - |
| 3 | Sobic.003G160100 | - | - |
| 4 | Sobic.002G119100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed | - |
| 5 | Sobic.006G235300 | expressed protein | - |
| 6 | Sobic.002G244200 | nucleolar GTP-binding protein 1, putative, expressed | - |
| 7 | Sobic.004G127800 | AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 8 | Sobic.009G100700 | - | - |
| 9 | Sobic.004G086150 | - | - |
| 10 | Sobic.009G248801 | - | - |
| 11 | Sobic.008G038500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed | K10773: endonuclease III |
| 12 | Sobic.004G338000 | PPCK(PubMedID : 19549309)@PEP carboxylase kinase(PubMedID : 20410319)@-(PubMedID : 26976818)@phosphorylation of leaf PEPC during C4 photosynthesis.(PubMedID : 16925599)@calcium-dependent protein kinase isoform AK1, putative, expressed | - |
| 13 | Sobic.005G068700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed | K00858: ppnK, NAD+ kinase |
| 14 | Sobic.009G093100 | OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed | - |
| 15 | Sobic.006G235400 | ELMO/CED-12 family protein, putative, expressed | K08869: ADCK, aarF domain-containing kinase |
| 16 | Sobic.010G231300 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 17 | Sobic.008G166550 | - | - |
| 18 | Sobic.007G133000 | 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed | K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase |
| 19 | Sobic.006G161500 | elongation factor, putative, expressed | K02355: fusA, GFM, elongation factor G |
| 20 | Sobic.007G006200 | NBS-LRR disease resistance protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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