Gene annotation
Transcriptome id Sobic.006G235300.1
Synonym Sb06g030230, SEP2
Functional annotation expressed protein
UniProt C5Y8X8
Pfam PF00504
Panther DB PTHR36490 PTHR36490:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G21970 : stress enhanced protein 2
RAP-DB (Rice) LOC_Os04g54630.1 : expressed protein
MaizeGDB (Corn) Zm00025a009600 , Zm00025a057159
Brachypodium KQJ84874
Barley HORVU2Hr1G115730.7 , HORVU2Hr1G115730.6 , HORVU2Hr1G115730.5 , HORVU2Hr1G115730.4 , HORVU2Hr1G115730.3 , HORVU2Hr1G115730.2 , HORVU2Hr1G115730.1 , HORVU2Hr1G115730.9 , HORVU2Hr1G115730.8 , HORVU2Hr1G115730.10
Wheat TraesCS2B02G553600 , TraesCS2D02G525900 , TraesCS2A02G523700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G235300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
4 Sobic.001G077300 thioredoxin, putative, expressed -
5 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
7 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
9 Sobic.007G227100 expressed protein -
10 Sobic.007G006200 NBS-LRR disease resistance protein, putative, expressed -
11 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
12 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
13 Sobic.006G212800 expressed protein -
14 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
15 Sobic.004G338000 PPCK(PubMedID : 19549309)@PEP carboxylase kinase(PubMedID : 20410319)@-(PubMedID : 26976818)@phosphorylation of leaf PEPC during C4 photosynthesis.(PubMedID : 16925599)@calcium-dependent protein kinase isoform AK1, putative, expressed -
16 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
17 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
18 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
19 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
20 Sobic.004G006800 expressed protein -


Gene co-expression network
sample Sobic006G235300 Sobic006G235300 Sobic004G127800 Sobic004G127800 Sobic006G235300--Sobic004G127800 Sobic006G235400 Sobic006G235400 Sobic006G235300--Sobic006G235400 Sobic002G161400 Sobic002G161400 Sobic006G235300--Sobic002G161400 Sobic001G077300 Sobic001G077300 Sobic006G235300--Sobic001G077300 Sobic006G191500 Sobic006G191500 Sobic006G235300--Sobic006G191500 Sobic004G128900 Sobic004G128900 Sobic006G235300--Sobic004G128900 Sobic009G194500 Sobic009G194500 Sobic006G235300--Sobic009G194500 Sobic003G380200 Sobic003G380200 Sobic006G235300--Sobic003G380200 Sobic007G227100 Sobic007G227100 Sobic006G235300--Sobic007G227100 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic004G127800--Sobic006G235300 Sobic004G312600 Sobic004G312600 Sobic004G127800--Sobic004G312600 Sobic004G127800--Sobic006G235400 Sobic006G090100 Sobic006G090100 Sobic004G127800--Sobic006G090100 Sobic001G331600 Sobic001G331600 Sobic004G127800--Sobic001G331600 Sobic004G127800--Sobic006G191500 Sobic009G073900 Sobic009G073900 Sobic004G127800--Sobic009G073900 Sobic010G231300 Sobic010G231300 Sobic006G235400--Sobic010G231300 Sobic006G235400--Sobic001G077300 Sobic006G235400--Sobic004G128900 Sobic003G341300 Sobic003G341300 Sobic006G235400--Sobic003G341300 Sobic003G409700 Sobic003G409700 Sobic006G235400--Sobic003G409700 Sobic008G129900 Sobic008G129900 Sobic006G235400--Sobic008G129900 Sobic006G161500 Sobic006G161500 Sobic006G235400--Sobic006G161500 Sobic006G235400--Sobic003G380200 Sobic001G180200 Sobic001G180200 Sobic006G235400--Sobic001G180200 Sobic002G161400--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic003G304300 Sobic003G304300 Sobic002G161400--Sobic003G304300 Sobic001G485100 Sobic001G485100 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic001G077300--Sobic006G235400 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic003G186800 Sobic003G186800 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic001G046000 Sobic001G046000 Sobic006G191500--Sobic001G046000 Sobic004G128900--Sobic002G161400 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic004G128900--Sobic006G235400 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic002G119100 Sobic002G119100 Sobic009G194500--Sobic002G119100 Sobic009G194500--Sobic006G161500 Sobic009G194500--Sobic010G231300 Sobic004G322600 Sobic004G322600 Sobic009G194500--Sobic004G322600 Sobic008G038500 Sobic008G038500 Sobic009G194500--Sobic008G038500 Sobic003G314000 Sobic003G314000 Sobic009G194500--Sobic003G314000 Sobic007G140700 Sobic007G140700 Sobic009G194500--Sobic007G140700 Sobic009G194500--Sobic004G127800 Sobic009G194500--Sobic006G235400 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic003G380200--Sobic004G267700 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic007G227100--Sobic004G312600 Sobic007G227100--Sobic004G127800 Sobic007G227100--Sobic001G077300 Sobic007G227100--Sobic001G331600 Sobic007G227100--Sobic008G038500 Sobic002G382700 Sobic002G382700 Sobic007G227100--Sobic002G382700 Sobic007G227100--Sobic006G235400 Sobic007G227100--Sobic003G341300 Sobic007G227100--Sobic001G485100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.