Gene annotation
Transcriptome id Sobic.004G338000.1
Synonym PPCK1 ;phosphoenolpyruvate carboxylase kinase,PPCK1; ATPPCK1, ATPPCK1, SbPPCK1, PPCK1, Sb04g036570
Functional annotation PPCK (PubMedID : 19549309)
PEP carboxylase kinase (PubMedID : 20410319)
- (PubMedID : 26976818)
phosphorylation of leaf PEPC during C4 photosynthesis. (PubMedID : 16925599)
calcium-dependent protein kinase isoform AK1, putative, expressed
UniProt Q2EF47 , C5XV67
Pfam PF07714
Panther DB PTHR24349 PTHR24349:SF76
NCBI CDD KOG0583; Serine/threonine protein kinase KOG0033Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G08650 : phosphoenolpyruvate carboxylase kinase 1
RAP-DB (Rice) LOC_Os02g56310.1 : calcium-dependent protein kinase isoform AK1, putative, expressed
MaizeGDB (Corn) Zm00025a010719 , Zm00025a022535
Brachypodium KQK01259
Barley HORVU7Hr1G001420.1 , HORVU7Hr1G001420.2 , HORVU2Hr1G036080.4 , HORVU2Hr1G036080.6 , HORVU2Hr1G036080.1 , HORVU2Hr1G036080.3 , HORVU2Hr1G036080.2 , HORVU2Hr1G036080.5 , HORVU2Hr1G036080.7 , HORVU2Hr1G036080.9 , HORVU2Hr1G036080.8 , HORVU6Hr1G067760.6 , HORVU6Hr1G067760.7 , HORVU6Hr1G067760.4 , HORVU6Hr1G067760.5 , HORVU6Hr1G067760.2 , HORVU6Hr1G067760.3 , HORVU6Hr1G067760.1 , HORVU6Hr1G067760.8 , HORVU6Hr1G067760.10 , HORVU6Hr1G067760.11 , HORVU6Hr1G067760.12 , HORVU5Hr1G037500.1 , HORVU5Hr1G037500.2 , HORVU2Hr1G036080.11 , HORVU2Hr1G036080.10
Wheat TraesCS6D02G360800 , TraesCS6B02G413500 , TraesCS6D02G360900 , TraesCS6B02G413600 , TraesCS6D02G211900 , TraesCS6A02G375800 , TraesCS6A02G375900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G235300 expressed protein -
2 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
3 Sobic.007G006200 NBS-LRR disease resistance protein, putative, expressed -
4 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
5 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
7 Sobic.010G131700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCttP3 - Putative C-terminal processing peptidase homologue, expressed -
8 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
9 Sobic.005G095000 -(PubMedID : 22050783)@-(PubMedID : 25928459)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
10 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
11 Sobic.009G246400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
12 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
13 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH
14 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
15 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
16 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
17 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
18 Sobic.001G077300 thioredoxin, putative, expressed -
19 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
20 Sobic.001G112900 expressed protein -


Gene co-expression network
sample Sobic004G338000 Sobic004G338000 Sobic006G235300 Sobic006G235300 Sobic004G338000--Sobic006G235300 Sobic002G161400 Sobic002G161400 Sobic004G338000--Sobic002G161400 Sobic007G006200 Sobic007G006200 Sobic004G338000--Sobic007G006200 Sobic006G191500 Sobic006G191500 Sobic004G338000--Sobic006G191500 Sobic004G127800 Sobic004G127800 Sobic004G338000--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic004G338000--Sobic002G293500 Sobic010G131700 Sobic010G131700 Sobic004G338000--Sobic010G131700 Sobic002G119100 Sobic002G119100 Sobic004G338000--Sobic002G119100 Sobic005G095000 Sobic005G095000 Sobic004G338000--Sobic005G095000 Sobic006G235300--Sobic004G127800 Sobic006G235400 Sobic006G235400 Sobic006G235300--Sobic006G235400 Sobic006G235300--Sobic002G161400 Sobic001G077300 Sobic001G077300 Sobic006G235300--Sobic001G077300 Sobic006G235300--Sobic006G191500 Sobic004G128900 Sobic004G128900 Sobic006G235300--Sobic004G128900 Sobic009G194500 Sobic009G194500 Sobic006G235300--Sobic009G194500 Sobic003G380200 Sobic003G380200 Sobic006G235300--Sobic003G380200 Sobic007G227100 Sobic007G227100 Sobic006G235300--Sobic007G227100 Sobic002G161400--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic003G304300 Sobic003G304300 Sobic002G161400--Sobic003G304300 Sobic001G485100 Sobic001G485100 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic007G006200--Sobic006G191500 Sobic007G006200--Sobic002G161400 Sobic007G006200--Sobic004G127800 Sobic010G223200 Sobic010G223200 Sobic007G006200--Sobic010G223200 Sobic007G006200--Sobic006G235300 Sobic007G006200--Sobic003G380200 Sobic006G090100 Sobic006G090100 Sobic007G006200--Sobic006G090100 Sobic007G006200--Sobic001G077300 Sobic007G006200--Sobic002G119100 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic003G186800 Sobic003G186800 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic001G046000 Sobic001G046000 Sobic006G191500--Sobic001G046000 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic004G127800--Sobic006G235300 Sobic004G312600 Sobic004G312600 Sobic004G127800--Sobic004G312600 Sobic004G127800--Sobic006G235400 Sobic004G127800--Sobic006G090100 Sobic001G331600 Sobic001G331600 Sobic004G127800--Sobic001G331600 Sobic004G127800--Sobic006G191500 Sobic009G073900 Sobic009G073900 Sobic004G127800--Sobic009G073900 Sobic002G293500--Sobic004G153900 Sobic002G293500--Sobic001G046000 Sobic002G293500--Sobic002G161400 Sobic002G293500--Sobic001G331600 Sobic002G293500--Sobic004G312600 Sobic002G293500--Sobic004G127800 Sobic002G293500--Sobic007G227100 Sobic002G293500--Sobic010G131700 Sobic002G293500--Sobic001G485100 Sobic010G131700--Sobic002G293500 Sobic010G131700--Sobic004G127800 Sobic010G131700--Sobic005G095000 Sobic008G038500 Sobic008G038500 Sobic010G131700--Sobic008G038500 Sobic010G131700--Sobic002G119100 Sobic010G131700--Sobic006G090100 Sobic001G359300 Sobic001G359300 Sobic010G131700--Sobic001G359300 Sobic010G131700--Sobic007G227100 Sobic010G131700--Sobic009G194500 Sobic002G119100--Sobic009G194500 Sobic004G322600 Sobic004G322600 Sobic002G119100--Sobic004G322600 Sobic006G161500 Sobic006G161500 Sobic002G119100--Sobic006G161500 Sobic002G119100--Sobic008G038500 Sobic002G119100--Sobic004G127800 Sobic001G244600 Sobic001G244600 Sobic002G119100--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic002G119100--Sobic004G322700 Sobic002G119100--Sobic007G227100 Sobic002G119100--Sobic002G293500 Sobic005G095000--Sobic009G194500 Sobic005G095000--Sobic010G131700 Sobic003G160100 Sobic003G160100 Sobic005G095000--Sobic003G160100 Sobic005G095000--Sobic002G119100 Sobic005G095000--Sobic006G235300 Sobic002G244200 Sobic002G244200 Sobic005G095000--Sobic002G244200 Sobic005G095000--Sobic004G127800 Sobic009G100700 Sobic009G100700 Sobic005G095000--Sobic009G100700 Sobic004G086150 Sobic004G086150 Sobic005G095000--Sobic004G086150
Octagon: transcription factors


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