Gene annotation
Transcriptome id Sobic.007G090403.1
Synonym -
Functional annotation -
UniProt A0A1Z5R9C5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
2 Sobic.002G244200 nucleolar GTP-binding protein 1, putative, expressed -
3 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
4 Sobic.001G062900 peptidase, putative, expressed K01301: N-acetylated-alpha-linked acidic dipeptidase
5 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.001G133000 expressed protein -
7 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
8 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
9 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
10 Sobic.003G146500 red chlorophyll catabolite reductase, putative, expressed K13545: RCCR, red chlorophyll catabolite reductase
11 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
12 Sobic.006G133900 NIN, putative, expressed -
13 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
14 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
16 Sobic.007G185300 - -
17 Sobic.003G179350 - -
18 Sobic.001G530900 expressed protein -
19 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
20 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3


Gene co-expression network
sample Sobic007G090403 Sobic007G090403 Sobic005G068700 Sobic005G068700 Sobic007G090403--Sobic005G068700 Sobic002G244200 Sobic002G244200 Sobic007G090403--Sobic002G244200 Sobic006G219600 Sobic006G219600 Sobic007G090403--Sobic006G219600 Sobic001G062900 Sobic001G062900 Sobic007G090403--Sobic001G062900 Sobic005G149200 Sobic005G149200 Sobic007G090403--Sobic005G149200 Sobic001G133000 Sobic001G133000 Sobic007G090403--Sobic001G133000 Sobic009G123900 Sobic009G123900 Sobic007G090403--Sobic009G123900 Sobic006G065100 Sobic006G065100 Sobic007G090403--Sobic006G065100 Sobic009G215500 Sobic009G215500 Sobic007G090403--Sobic009G215500 Sobic001G258200 Sobic001G258200 Sobic005G068700--Sobic001G258200 Sobic005G101200 Sobic005G101200 Sobic005G068700--Sobic005G101200 Sobic003G185900 Sobic003G185900 Sobic005G068700--Sobic003G185900 Sobic002G056500 Sobic002G056500 Sobic005G068700--Sobic002G056500 Sobic008G129900 Sobic008G129900 Sobic005G068700--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic005G068700--Sobic008G033000 Sobic001G217900 Sobic001G217900 Sobic005G068700--Sobic001G217900 Sobic002G390100 Sobic002G390100 Sobic005G068700--Sobic002G390100 Sobic002G206300 Sobic002G206300 Sobic005G068700--Sobic002G206300 Sobic009G248801 Sobic009G248801 Sobic002G244200--Sobic009G248801 Sobic005G095000 Sobic005G095000 Sobic002G244200--Sobic005G095000 Sobic008G166550 Sobic008G166550 Sobic002G244200--Sobic008G166550 Sobic002G244200--Sobic007G090403 Sobic007G133000 Sobic007G133000 Sobic002G244200--Sobic007G133000 Sobic003G160100 Sobic003G160100 Sobic002G244200--Sobic003G160100 Sobic004G086150 Sobic004G086150 Sobic002G244200--Sobic004G086150 Sobic007G202300 Sobic007G202300 Sobic002G244200--Sobic007G202300 Sobic003G416000 Sobic003G416000 Sobic002G244200--Sobic003G416000 Sobic003G155100 Sobic003G155100 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic001G062900--Sobic007G090403 Sobic003G342100 Sobic003G342100 Sobic001G062900--Sobic003G342100 Sobic001G062900--Sobic009G215500 Sobic001G073900 Sobic001G073900 Sobic001G062900--Sobic001G073900 Sobic001G530900 Sobic001G530900 Sobic001G062900--Sobic001G530900 Sobic001G531500 Sobic001G531500 Sobic001G062900--Sobic001G531500 Sobic003G332700 Sobic003G332700 Sobic001G062900--Sobic003G332700 Sobic001G105200 Sobic001G105200 Sobic001G062900--Sobic001G105200 Sobic005G001700 Sobic005G001700 Sobic001G062900--Sobic005G001700 Sobic001G375100 Sobic001G375100 Sobic005G149200--Sobic001G375100 Sobic005G149200--Sobic006G219600 Sobic001G454500 Sobic001G454500 Sobic005G149200--Sobic001G454500 Sobic005G149200--Sobic006G133900 Sobic003G301900 Sobic003G301900 Sobic005G149200--Sobic003G301900 Sobic001G517800 Sobic001G517800 Sobic005G149200--Sobic001G517800 Sobic001G333800 Sobic001G333800 Sobic005G149200--Sobic001G333800 Sobic005G149200--Sobic007G090403 Sobic005G149200--Sobic003G155100 Sobic001G133000--Sobic005G106600 Sobic001G133000--Sobic006G219600 Sobic009G038900 Sobic009G038900 Sobic001G133000--Sobic009G038900 Sobic003G220100 Sobic003G220100 Sobic001G133000--Sobic003G220100 Sobic001G133000--Sobic006G133900 Sobic001G133000--Sobic001G333800 Sobic001G243200 Sobic001G243200 Sobic001G133000--Sobic001G243200 Sobic001G133000--Sobic009G201300 Sobic001G133000--Sobic009G215500 Sobic002G118200 Sobic002G118200 Sobic009G123900--Sobic002G118200 Sobic009G123900--Sobic005G068700 Sobic009G123900--Sobic002G056500 Sobic003G036200 Sobic003G036200 Sobic009G123900--Sobic003G036200 Sobic009G123900--Sobic001G531500 Sobic004G019800 Sobic004G019800 Sobic009G123900--Sobic004G019800 Sobic002G402700 Sobic002G402700 Sobic009G123900--Sobic002G402700 Sobic007G005400 Sobic007G005400 Sobic009G123900--Sobic007G005400 Sobic004G268300 Sobic004G268300 Sobic009G123900--Sobic004G268300 Sobic009G093100 Sobic009G093100 Sobic006G065100--Sobic009G093100 Sobic001G077300 Sobic001G077300 Sobic006G065100--Sobic001G077300 Sobic004G127800 Sobic004G127800 Sobic006G065100--Sobic004G127800 Sobic003G073800 Sobic003G073800 Sobic006G065100--Sobic003G073800 Sobic001G378100 Sobic001G378100 Sobic006G065100--Sobic001G378100 Sobic006G090100 Sobic006G090100 Sobic006G065100--Sobic006G090100 Sobic002G081400 Sobic002G081400 Sobic006G065100--Sobic002G081400 Sobic005G179300 Sobic005G179300 Sobic006G065100--Sobic005G179300 Sobic006G065100--Sobic001G333800 Sobic009G215500--Sobic001G530900 Sobic008G044100 Sobic008G044100 Sobic009G215500--Sobic008G044100 Sobic004G134200 Sobic004G134200 Sobic009G215500--Sobic004G134200 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic009G215500--Sobic006G219600 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic009G215500--Sobic006G050700
Octagon: transcription factors


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