Gene annotation
| Transcriptome id | Sobic.009G123900.1 |
|---|---|
| Synonym | Sb09g019170 |
| Functional annotation | L1P family of ribosomal proteins domain containing protein, expressed |
| UniProt | C5YXG6 |
| Pfam | PF00687 |
| Panther DB | PTHR23105 PTHR23105:SF5 |
| NCBI CDD | KOG1569; 50S ribosomal protein L1 |
| KEGG Orthology | K02863; RP-L1, MRPL1, large subunit ribosomal protein L1 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G63490 : Ribosomal protein L1p/L10e family |
|---|---|
| RAP-DB (Rice) | LOC_Os05g32220.1 : L1P family of ribosomal proteins domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a043537 |
| Brachypodium | KQK06554 |
| Barley | HORVU1Hr1G056510.4 , HORVU1Hr1G056510.2 , HORVU1Hr1G056510.3 |
| Wheat | TraesCS1D02G242500 , TraesCS1B02G254000 |
| Populus | - |
JBrowse
| Sobic.009G123900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G118200 | tetratricopeptide repeat domain containing protein, putative, expressed | K03255: TIF31, protein TIF31 |
| 2 | Sobic.005G068700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed | K00858: ppnK, NAD+ kinase |
| 3 | Sobic.002G056500 | with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | K08867: WNK, WNK lysine deficient protein kinase |
| 4 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 5 | Sobic.001G531500 | peroxisomal biogenesis factor 11, putative, expressed | - |
| 6 | Sobic.004G019800 | MATE domain containing protein, expressed | - |
| 7 | Sobic.002G402700 | -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed | K00284: GLU, glutamate synthase (ferredoxin) |
| 8 | Sobic.007G005400 | chaperone protein dnaJ, putative, expressed | K03686: molecular chaperone DnaJ |
| 9 | Sobic.004G268300 | phosphatase, putative, expressed | - |
| 10 | Sobic.005G101200 | ELMO/CED-12 family protein, putative, expressed | - |
| 11 | Sobic.009G093100 | OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed | - |
| 12 | Sobic.002G404800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed | K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 |
| 13 | Sobic.009G219100 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed | - |
| 14 | Sobic.005G118400 | expressed protein | - |
| 15 | Sobic.001G540600 | expressed protein | - |
| 16 | Sobic.007G090403 | - | - |
| 17 | Sobic.002G390100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit |
| 18 | Sobic.007G140700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed | K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+) |
| 19 | Sobic.010G181100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD binding domain containing protein, expressed | - |
| 20 | Sobic.001G258200 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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