Gene annotation
Transcriptome id Sobic.001G531500.1
Synonym Sb01g049450, PEX11C
Functional annotation peroxisomal biogenesis factor 11, putative, expressed
UniProt C5X104
Pfam PF05648
Panther DB PTHR12652 PTHR12652:SF24
NCBI CDD KOG4186; Peroxisomal biogenesis protein (peroxin)
KEGG Orthology -
Gene Ontology GO:0016559; peroxisome fission GO:0005779integral component of peroxisomal membrane


Orthologs (automatic annotation)
TAIR AT1G01820 : peroxin 11c
RAP-DB (Rice) LOC_Os03g02590.4 : peroxisomal biogenesis factor 11, putative, expressed
MaizeGDB (Corn) Zm00025a000241
Brachypodium PNT78323 , KQK23979 , KQK23980
Barley HORVU4Hr1G085960.8 , HORVU4Hr1G085960.9 , HORVU4Hr1G085960.2 , HORVU4Hr1G085960.3 , HORVU4Hr1G085960.1 , HORVU4Hr1G085960.6 , HORVU4Hr1G085960.7 , HORVU4Hr1G085960.4 , HORVU4Hr1G085960.5
Wheat TraesCS4B02G355100 , TraesCS5A02G524400 , TraesCS4D02G348600
Populus -


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cDNA sequences
Sobic.001G531500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
2 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
3 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
4 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
5 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
6 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
7 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
8 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
9 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
10 Sobic.003G146500 red chlorophyll catabolite reductase, putative, expressed K13545: RCCR, red chlorophyll catabolite reductase
11 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
12 Sobic.004G027600 expressed protein -
13 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
14 Sobic.004G235600 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
16 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
17 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
18 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
19 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -


Gene co-expression network
sample Sobic001G531500 Sobic001G531500 Sobic002G118200 Sobic002G118200 Sobic001G531500--Sobic002G118200 Sobic006G064100 Sobic006G064100 Sobic001G531500--Sobic006G064100 Sobic002G403600 Sobic002G403600 Sobic001G531500--Sobic002G403600 Sobic001G073900 Sobic001G073900 Sobic001G531500--Sobic001G073900 Sobic010G205100 Sobic010G205100 Sobic001G531500--Sobic010G205100 Sobic009G123900 Sobic009G123900 Sobic001G531500--Sobic009G123900 Sobic005G001700 Sobic005G001700 Sobic001G531500--Sobic005G001700 Sobic008G001900 Sobic008G001900 Sobic001G531500--Sobic008G001900 Sobic003G332700 Sobic003G332700 Sobic001G531500--Sobic003G332700 Sobic007G005400 Sobic007G005400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic002G118200--Sobic001G531500 Sobic003G085100 Sobic003G085100 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic002G118200--Sobic009G123900 Sobic004G019800 Sobic004G019800 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic006G064100--Sobic010G205100 Sobic006G064100--Sobic001G531500 Sobic006G064100--Sobic002G403600 Sobic006G064100--Sobic001G073900 Sobic006G120500 Sobic006G120500 Sobic006G064100--Sobic006G120500 Sobic004G317500 Sobic004G317500 Sobic006G064100--Sobic004G317500 Sobic001G305600 Sobic001G305600 Sobic006G064100--Sobic001G305600 Sobic003G036200 Sobic003G036200 Sobic006G064100--Sobic003G036200 Sobic010G085100 Sobic010G085100 Sobic006G064100--Sobic010G085100 Sobic002G403600--Sobic001G531500 Sobic004G027600 Sobic004G027600 Sobic002G403600--Sobic004G027600 Sobic002G403600--Sobic006G064100 Sobic002G403600--Sobic001G073900 Sobic004G356400 Sobic004G356400 Sobic002G403600--Sobic004G356400 Sobic002G403600--Sobic003G036200 Sobic002G403600--Sobic006G120500 Sobic002G403600--Sobic005G001700 Sobic010G251700 Sobic010G251700 Sobic002G403600--Sobic010G251700 Sobic001G073900--Sobic003G332700 Sobic001G073900--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic010G205100--Sobic006G064100 Sobic010G205100--Sobic010G085100 Sobic010G205100--Sobic001G531500 Sobic010G205100--Sobic001G073900 Sobic009G038900 Sobic009G038900 Sobic010G205100--Sobic009G038900 Sobic010G205100--Sobic003G036200 Sobic005G101200 Sobic005G101200 Sobic010G205100--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic010G205100--Sobic002G404800 Sobic010G205100--Sobic003G332700 Sobic009G123900--Sobic002G118200 Sobic005G068700 Sobic005G068700 Sobic009G123900--Sobic005G068700 Sobic002G056500 Sobic002G056500 Sobic009G123900--Sobic002G056500 Sobic009G123900--Sobic003G036200 Sobic009G123900--Sobic001G531500 Sobic009G123900--Sobic004G019800 Sobic002G402700 Sobic002G402700 Sobic009G123900--Sobic002G402700 Sobic009G123900--Sobic007G005400 Sobic004G268300 Sobic004G268300 Sobic009G123900--Sobic004G268300 Sobic005G001700--Sobic008G001900 Sobic002G220900 Sobic002G220900 Sobic005G001700--Sobic002G220900 Sobic005G204200 Sobic005G204200 Sobic005G001700--Sobic005G204200 Sobic010G067100 Sobic010G067100 Sobic005G001700--Sobic010G067100 Sobic005G063000 Sobic005G063000 Sobic005G001700--Sobic005G063000 Sobic003G185900 Sobic003G185900 Sobic005G001700--Sobic003G185900 Sobic005G001700--Sobic002G402700 Sobic005G001700--Sobic003G036200 Sobic007G009200 Sobic007G009200 Sobic005G001700--Sobic007G009200 Sobic008G001900--Sobic005G001700 Sobic008G001900--Sobic001G073900 Sobic008G001900--Sobic004G235600 Sobic008G001900--Sobic003G085100 Sobic008G001900--Sobic003G332700 Sobic004G054400 Sobic004G054400 Sobic008G001900--Sobic004G054400 Sobic008G001900--Sobic005G063000 Sobic008G001900--Sobic005G204200 Sobic001G465700 Sobic001G465700 Sobic008G001900--Sobic001G465700 Sobic003G332700--Sobic001G073900 Sobic003G332700--Sobic008G001900 Sobic003G332700--Sobic008G117000 Sobic001G530900 Sobic001G530900 Sobic003G332700--Sobic001G530900 Sobic003G332700--Sobic004G235600 Sobic003G332700--Sobic001G531500 Sobic003G442700 Sobic003G442700 Sobic003G332700--Sobic003G442700 Sobic003G332700--Sobic010G085100 Sobic005G118400 Sobic005G118400 Sobic003G332700--Sobic005G118400
Octagon: transcription factors


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