Gene annotation
Transcriptome id Sobic.004G235600.1
Synonym Sb04g027830
Functional annotation mTERF family protein, expressed
UniProt C5XYR4
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF41
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os02g51450.2 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a022108 , Zm00025a014949 , Zm00025a019332
Brachypodium KQK01898
Barley HORVU5Hr1G069340.1 , HORVU5Hr1G069340.2
Wheat TraesCS2B02G093600
Populus -


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cDNA sequences
Sobic.004G235600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
2 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
3 Sobic.003G442700 - -
4 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
5 Sobic.003G085100 MYB family transcription factor, putative, expressed -
6 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
7 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
8 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
9 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
10 Sobic.005G111550 - -
11 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
12 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
13 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
14 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
15 Sobic.004G298900 OR, putative, expressed -
16 Sobic.006G105800 tyrosyl-tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
17 Sobic.006G101500 expressed protein -
18 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
19 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
20 Sobic.006G010900 expressed protein -


Gene co-expression network
sample Sobic004G235600 Sobic004G235600 Sobic008G001900 Sobic008G001900 Sobic004G235600--Sobic008G001900 Sobic001G073900 Sobic001G073900 Sobic004G235600--Sobic001G073900 Sobic003G442700 Sobic003G442700 Sobic004G235600--Sobic003G442700 Sobic003G332700 Sobic003G332700 Sobic004G235600--Sobic003G332700 Sobic003G085100 Sobic003G085100 Sobic004G235600--Sobic003G085100 Sobic005G001700 Sobic005G001700 Sobic004G235600--Sobic005G001700 Sobic002G314400 Sobic002G314400 Sobic004G235600--Sobic002G314400 Sobic002G042500 Sobic002G042500 Sobic004G235600--Sobic002G042500 Sobic001G465700 Sobic001G465700 Sobic004G235600--Sobic001G465700 Sobic008G001900--Sobic005G001700 Sobic008G001900--Sobic001G073900 Sobic008G001900--Sobic004G235600 Sobic008G001900--Sobic003G085100 Sobic008G001900--Sobic003G332700 Sobic004G054400 Sobic004G054400 Sobic008G001900--Sobic004G054400 Sobic005G063000 Sobic005G063000 Sobic008G001900--Sobic005G063000 Sobic005G204200 Sobic005G204200 Sobic008G001900--Sobic005G204200 Sobic008G001900--Sobic001G465700 Sobic001G073900--Sobic003G332700 Sobic001G073900--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G531500 Sobic001G531500 Sobic001G073900--Sobic001G531500 Sobic001G073900--Sobic005G001700 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic003G442700--Sobic001G465700 Sobic003G442700--Sobic004G235600 Sobic003G442700--Sobic008G001900 Sobic003G442700--Sobic003G332700 Sobic009G121000 Sobic009G121000 Sobic003G442700--Sobic009G121000 Sobic003G442700--Sobic002G042500 Sobic001G060401 Sobic001G060401 Sobic003G442700--Sobic001G060401 Sobic004G001300 Sobic004G001300 Sobic003G442700--Sobic004G001300 Sobic003G442700--Sobic001G073900 Sobic003G332700--Sobic001G073900 Sobic003G332700--Sobic008G001900 Sobic003G332700--Sobic008G117000 Sobic001G530900 Sobic001G530900 Sobic003G332700--Sobic001G530900 Sobic003G332700--Sobic004G235600 Sobic003G332700--Sobic001G531500 Sobic003G332700--Sobic003G442700 Sobic010G085100 Sobic010G085100 Sobic003G332700--Sobic010G085100 Sobic005G118400 Sobic005G118400 Sobic003G332700--Sobic005G118400 Sobic003G150800 Sobic003G150800 Sobic003G085100--Sobic003G150800 Sobic007G005400 Sobic007G005400 Sobic003G085100--Sobic007G005400 Sobic005G111550 Sobic005G111550 Sobic003G085100--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic003G085100--Sobic003G160800 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G287900 Sobic003G287900 Sobic003G085100--Sobic003G287900 Sobic003G085100--Sobic008G001900 Sobic005G001700--Sobic008G001900 Sobic002G220900 Sobic002G220900 Sobic005G001700--Sobic002G220900 Sobic005G001700--Sobic005G204200 Sobic010G067100 Sobic010G067100 Sobic005G001700--Sobic010G067100 Sobic005G001700--Sobic005G063000 Sobic003G185900 Sobic003G185900 Sobic005G001700--Sobic003G185900 Sobic002G402700 Sobic002G402700 Sobic005G001700--Sobic002G402700 Sobic003G036200 Sobic003G036200 Sobic005G001700--Sobic003G036200 Sobic007G009200 Sobic007G009200 Sobic005G001700--Sobic007G009200 Sobic002G314400--Sobic003G085100 Sobic002G314400--Sobic003G150800 Sobic002G314400--Sobic005G111550 Sobic002G314400--Sobic005G063000 Sobic002G314400--Sobic004G235600 Sobic002G314400--Sobic001G001300 Sobic002G314400--Sobic008G001900 Sobic002G314400--Sobic005G001700 Sobic010G214100 Sobic010G214100 Sobic002G314400--Sobic010G214100 Sobic001G037500 Sobic001G037500 Sobic002G042500--Sobic001G037500 Sobic002G042500--Sobic003G150800 Sobic002G042500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic002G042500--Sobic004G206200 Sobic002G042500--Sobic003G085100 Sobic003G141100 Sobic003G141100 Sobic002G042500--Sobic003G141100 Sobic002G296100 Sobic002G296100 Sobic002G042500--Sobic002G296100 Sobic007G185700 Sobic007G185700 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300 Sobic006G038500 Sobic006G038500 Sobic001G465700--Sobic006G038500 Sobic010G043800 Sobic010G043800 Sobic001G465700--Sobic010G043800 Sobic001G465700--Sobic005G111550 Sobic001G465700--Sobic003G442700 Sobic001G465700--Sobic008G001900 Sobic004G294700 Sobic004G294700 Sobic001G465700--Sobic004G294700 Sobic001G465700--Sobic001G530900 Sobic004G298900 Sobic004G298900 Sobic001G465700--Sobic004G298900 Sobic006G031800 Sobic006G031800 Sobic001G465700--Sobic006G031800
Octagon: transcription factors


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