Gene annotation
| Transcriptome id | Sobic.001G073900.1 |
|---|---|
| Synonym | Sb01g006680, PMDH2 |
| Functional annotation | lactate/malate dehydrogenase, putative, expressed |
| UniProt | A0A1B6QHU0 |
| Pfam | PF00056 PF02866 |
| Panther DB | PTHR11540 PTHR11540:SF26 |
| NCBI CDD | - |
| KEGG Orthology | K00026; malate dehydrogenase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Orthologs (automatic annotation)
| TAIR | AT2G22780 : peroxisomal NAD-malate dehydrogenase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g56280.1 : lactate/malate dehydrogenase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a008373 |
| Brachypodium | PNT74057 , KQJ85667 , KQK12975 , KQJ85666 |
| Barley | HORVU5Hr1G098890.9 , HORVU5Hr1G098890.8 , HORVU5Hr1G098890.5 , HORVU5Hr1G098890.4 , HORVU5Hr1G098890.7 , HORVU5Hr1G098890.6 , HORVU5Hr1G098890.1 , HORVU5Hr1G098890.3 , HORVU5Hr1G098890.2 , HORVU5Hr1G098890.11 , HORVU5Hr1G098890.10 , HORVU5Hr1G098890.12 |
| Wheat | TraesCS5A02G407700 , TraesCS5A02G407700 , TraesCS5A02G407700 , TraesCS5B02G412500 , TraesCS5B02G412500 , TraesCS5B02G412500 , TraesCS5D02G417600 |
| Populus | PNT57204 , PNT57205 , PNT57206 , PNT57207 , PNT20273 , PNT20272 , PNT20271 , PNT20270 , PNT20277 , PNT20276 , PNT20275 , PNT20274 |
JBrowse
| Sobic.001G073900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G332700 | Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 2 | Sobic.008G001900 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 3 | Sobic.008G117000 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 4 | Sobic.003G342100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed | - |
| 5 | Sobic.001G065600 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 6 | Sobic.001G531500 | peroxisomal biogenesis factor 11, putative, expressed | - |
| 7 | Sobic.005G001700 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 8 | Sobic.004G235600 | mTERF family protein, expressed | K15032: mTERF domain-containing protein, mitochondrial |
| 9 | Sobic.002G049600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 11 | Sobic.002G403600 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed | - |
| 12 | Sobic.010G205100 | Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed | K00696: sucrose-phosphate synthase |
| 13 | Sobic.010G085100 | geminivirus Rep-interacting motor protein, putative, expressed | - |
| 14 | Sobic.003G443500 | cyclase/dehydrase family protein, expressed | - |
| 15 | Sobic.006G064100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | - |
| 16 | Sobic.008G033200 | stem-specific protein TSJT1, putative, expressed | - |
| 17 | Sobic.008G094000 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 18 | Sobic.003G442700 | - | - |
| 19 | Sobic.003G003600 | similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed | - |
| 20 | Sobic.001G468700 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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