Gene annotation
Transcriptome id Sobic.001G065600.1
Synonym GOX, Sb01g005960
Functional annotation - (PubMedID : 26976818)
hydroxyacid oxidase 1, putative, expressed
UniProt C5WY71
Pfam PF01070
Panther DB PTHR10578 PTHR10578:SF80
NCBI CDD -
KEGG Orthology K11517; (S)-2-hydroxy-acid oxidase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G14420 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os03g57220.1 : hydroxyacid oxidase 1, putative, expressed
MaizeGDB (Corn) Zm00025a045035 , Zm00025a009719
Brachypodium KQK21065 , KQK12857 , KQK12856 , KQK21064
Barley HORVU0Hr1G013890.1 , HORVU0Hr1G013900.14 , HORVU2Hr1G060010.5 , HORVU2Hr1G060010.4 , HORVU2Hr1G060010.6 , HORVU2Hr1G060010.1 , HORVU2Hr1G060010.3 , HORVU2Hr1G060010.2 , HORVU0Hr1G013900.7 , HORVU0Hr1G013900.6 , HORVU0Hr1G013900.5 , HORVU0Hr1G013900.4 , HORVU0Hr1G013900.3 , HORVU0Hr1G013900.2 , HORVU0Hr1G013900.1 , HORVU0Hr1G013900.9 , HORVU0Hr1G013900.8 , HORVU0Hr1G013900.15 , HORVU6Hr1G051590.3 , HORVU6Hr1G051590.4 , HORVU0Hr1G013900.17 , HORVU0Hr1G013900.16 , HORVU0Hr1G013900.13 , HORVU0Hr1G013900.12 , HORVU0Hr1G013900.11 , HORVU0Hr1G013900.10 , HORVU6Hr1G051600.1 , HORVU6Hr1G051600.2 , HORVU6Hr1G051600.3
Wheat TraesCS5D02G432900 , TraesCS5A02G424400 , TraesCS2B02G264100 , TraesCS2B02G264100 , TraesCS5D02G432900 , TraesCS5B02G426500 , TraesCS5B02G426500 , TraesCS2D02G251800 , TraesCS2D02G251800 , TraesCS2A02G250800 , TraesCS2A02G250800
Populus -


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cDNA sequences
Sobic.001G065600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
2 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
3 Sobic.005G188600 - -
4 Sobic.006G010900 expressed protein -
5 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
6 Sobic.001G484400 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
7 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
8 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
9 Sobic.003G003600 similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed -
10 Sobic.003G443500 cyclase/dehydrase family protein, expressed -
11 Sobic.006G101500 expressed protein -
12 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
13 Sobic.001G468700 expressed protein -
14 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
15 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
17 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
18 Sobic.001G512500 expressed protein -
19 Sobic.003G442700 - -
20 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -


Gene co-expression network
sample Sobic001G065600 Sobic001G065600 Sobic001G158900 Sobic001G158900 Sobic001G065600--Sobic001G158900 Sobic001G073900 Sobic001G073900 Sobic001G065600--Sobic001G073900 Sobic005G188600 Sobic005G188600 Sobic001G065600--Sobic005G188600 Sobic006G010900 Sobic006G010900 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic002G036000 Sobic002G036000 Sobic001G065600--Sobic002G036000 Sobic001G003200 Sobic001G003200 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600 Sobic001G158900--Sobic001G065600 Sobic001G158900--Sobic002G036000 Sobic001G158900--Sobic005G188600 Sobic001G158900--Sobic001G003200 Sobic006G188000 Sobic006G188000 Sobic001G158900--Sobic006G188000 Sobic001G158900--Sobic006G010900 Sobic008G117000 Sobic008G117000 Sobic001G158900--Sobic008G117000 Sobic005G101300 Sobic005G101300 Sobic001G158900--Sobic005G101300 Sobic002G403600 Sobic002G403600 Sobic001G158900--Sobic002G403600 Sobic003G332700 Sobic003G332700 Sobic001G073900--Sobic003G332700 Sobic008G001900 Sobic008G001900 Sobic001G073900--Sobic008G001900 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G073900--Sobic001G065600 Sobic001G531500 Sobic001G531500 Sobic001G073900--Sobic001G531500 Sobic005G001700 Sobic005G001700 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic005G188600--Sobic001G065600 Sobic005G188600--Sobic001G158900 Sobic005G188600--Sobic006G188000 Sobic003G443500 Sobic003G443500 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic006G101500 Sobic006G101500 Sobic005G188600--Sobic006G101500 Sobic008G115900 Sobic008G115900 Sobic005G188600--Sobic008G115900 Sobic001G098301 Sobic001G098301 Sobic005G188600--Sobic001G098301 Sobic006G160400 Sobic006G160400 Sobic005G188600--Sobic006G160400 Sobic001G069000 Sobic001G069000 Sobic006G010900--Sobic001G069000 Sobic003G387100 Sobic003G387100 Sobic006G010900--Sobic003G387100 Sobic006G210400 Sobic006G210400 Sobic006G010900--Sobic006G210400 Sobic003G160800 Sobic003G160800 Sobic006G010900--Sobic003G160800 Sobic007G085800 Sobic007G085800 Sobic006G010900--Sobic007G085800 Sobic006G207800 Sobic006G207800 Sobic006G010900--Sobic006G207800 Sobic008G116300 Sobic008G116300 Sobic006G010900--Sobic008G116300 Sobic003G077400 Sobic003G077400 Sobic006G010900--Sobic003G077400 Sobic003G412900 Sobic003G412900 Sobic006G010900--Sobic003G412900 Sobic008G094000--Sobic001G065600 Sobic008G094000--Sobic001G003200 Sobic008G094000--Sobic001G073900 Sobic003G343500 Sobic003G343500 Sobic008G094000--Sobic003G343500 Sobic010G067100 Sobic010G067100 Sobic008G094000--Sobic010G067100 Sobic010G099700 Sobic010G099700 Sobic008G094000--Sobic010G099700 Sobic006G133900 Sobic006G133900 Sobic008G094000--Sobic006G133900 Sobic008G094000--Sobic008G115900 Sobic003G442700 Sobic003G442700 Sobic008G094000--Sobic003G442700 Sobic001G484400--Sobic001G065600 Sobic001G305600 Sobic001G305600 Sobic001G484400--Sobic001G305600 Sobic001G484400--Sobic001G073900 Sobic001G484400--Sobic008G115900 Sobic001G484400--Sobic003G443500 Sobic004G327700 Sobic004G327700 Sobic001G484400--Sobic004G327700 Sobic004G347800 Sobic004G347800 Sobic001G484400--Sobic004G347800 Sobic001G484400--Sobic006G010900 Sobic001G484400--Sobic008G001900 Sobic008G053200 Sobic008G053200 Sobic002G036000--Sobic008G053200 Sobic001G102800 Sobic001G102800 Sobic002G036000--Sobic001G102800 Sobic004G308700 Sobic004G308700 Sobic002G036000--Sobic004G308700 Sobic001G519800 Sobic001G519800 Sobic002G036000--Sobic001G519800 Sobic003G431700 Sobic003G431700 Sobic002G036000--Sobic003G431700 Sobic002G036000--Sobic006G101500 Sobic002G036000--Sobic003G443500 Sobic004G272100 Sobic004G272100 Sobic002G036000--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G036000--Sobic008G066100 Sobic009G056700 Sobic009G056700 Sobic001G003200--Sobic009G056700 Sobic007G053800 Sobic007G053800 Sobic001G003200--Sobic007G053800 Sobic004G121400 Sobic004G121400 Sobic001G003200--Sobic004G121400 Sobic007G150100 Sobic007G150100 Sobic001G003200--Sobic007G150100 Sobic001G003200--Sobic006G188000 Sobic003G398800 Sobic003G398800 Sobic001G003200--Sobic003G398800 Sobic001G048400 Sobic001G048400 Sobic001G003200--Sobic001G048400 Sobic001G003200--Sobic003G431700 Sobic001G504400 Sobic001G504400 Sobic001G003200--Sobic001G504400 Sobic003G003600--Sobic001G065600 Sobic003G003600--Sobic001G073900 Sobic003G003600--Sobic003G442700 Sobic004G001300 Sobic004G001300 Sobic003G003600--Sobic004G001300 Sobic001G418700 Sobic001G418700 Sobic003G003600--Sobic001G418700 Sobic003G161000 Sobic003G161000 Sobic003G003600--Sobic003G161000 Sobic008G001000 Sobic008G001000 Sobic003G003600--Sobic008G001000 Sobic003G003600--Sobic001G158900 Sobic002G385700 Sobic002G385700 Sobic003G003600--Sobic002G385700
Octagon: transcription factors


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