Gene annotation
Transcriptome id Sobic.001G484400.1
Synonym PAA2, HMA8, Sb01g045340, ATHMA8
Functional annotation copper-transporting ATPase PAA1, putative, expressed
UniProt A0A1B6QQ54
Pfam PF00403 PF00702 PF00122
Panther DB PTHR24093 PTHR24093:SF246
NCBI CDD -
KEGG Orthology K01533; P-type Cu2+ transporter
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G21930 : P-type ATPase of Arabidopsis 2
RAP-DB (Rice) LOC_Os03g08070.1 : copper-transporting ATPase PAA1, putative, expressed
MaizeGDB (Corn) Zm00025a000899
Brachypodium KQK23343
Barley HORVU4Hr1G076330.5 , HORVU4Hr1G076330.4 , HORVU4Hr1G076330.6 , HORVU4Hr1G076330.1 , HORVU4Hr1G076330.3 , HORVU4Hr1G076330.2 , HORVU0Hr1G009080.5 , HORVU0Hr1G009080.4 , HORVU0Hr1G009080.7 , HORVU0Hr1G009080.6 , HORVU0Hr1G009080.1 , HORVU0Hr1G009080.3 , HORVU0Hr1G009080.2
Wheat TraesCS4D02G292300 , TraesCS4D02G292300 , TraesCS4A02G010800 , TraesCS4A02G010800 , TraesCS4A02G010800 , TraesCS4B02G293600 , TraesCS4B02G293600 , TraesCS4B02G293600
Populus PNT33011


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cDNA sequences
Sobic.001G484400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
2 Sobic.001G305600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
3 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
4 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
5 Sobic.003G443500 cyclase/dehydrase family protein, expressed -
6 Sobic.004G327700 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
7 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
8 Sobic.006G010900 expressed protein -
9 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
10 Sobic.003G160200 multidrug resistance-associated protein, putative, expressed K05665: ATP-binding cassette, subfamily C (CFTR/MRP), member 1
11 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
12 Sobic.003G003600 similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed -
13 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
14 Sobic.001G129000 DnaK family protein, putative, expressed -
15 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
16 Sobic.007G126400 CPuORF27 - conserved peptide uORF-containing transcript, expressed K09338: homeobox-leucine zipper protein
17 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
18 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
19 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.007G171400 low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed K01104: protein-tyrosine phosphatase


Gene co-expression network
sample Sobic001G484400 Sobic001G484400 Sobic001G065600 Sobic001G065600 Sobic001G484400--Sobic001G065600 Sobic001G305600 Sobic001G305600 Sobic001G484400--Sobic001G305600 Sobic001G073900 Sobic001G073900 Sobic001G484400--Sobic001G073900 Sobic008G115900 Sobic008G115900 Sobic001G484400--Sobic008G115900 Sobic003G443500 Sobic003G443500 Sobic001G484400--Sobic003G443500 Sobic004G327700 Sobic004G327700 Sobic001G484400--Sobic004G327700 Sobic004G347800 Sobic004G347800 Sobic001G484400--Sobic004G347800 Sobic006G010900 Sobic006G010900 Sobic001G484400--Sobic006G010900 Sobic008G001900 Sobic008G001900 Sobic001G484400--Sobic008G001900 Sobic001G158900 Sobic001G158900 Sobic001G065600--Sobic001G158900 Sobic001G065600--Sobic001G073900 Sobic005G188600 Sobic005G188600 Sobic001G065600--Sobic005G188600 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G065600--Sobic001G484400 Sobic002G036000 Sobic002G036000 Sobic001G065600--Sobic002G036000 Sobic001G003200 Sobic001G003200 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600 Sobic001G305600--Sobic004G347800 Sobic005G045000 Sobic005G045000 Sobic001G305600--Sobic005G045000 Sobic006G064100 Sobic006G064100 Sobic001G305600--Sobic006G064100 Sobic002G273300 Sobic002G273300 Sobic001G305600--Sobic002G273300 Sobic001G305600--Sobic001G484400 Sobic008G168300 Sobic008G168300 Sobic001G305600--Sobic008G168300 Sobic001G531500 Sobic001G531500 Sobic001G305600--Sobic001G531500 Sobic003G418100 Sobic003G418100 Sobic001G305600--Sobic003G418100 Sobic010G176200 Sobic010G176200 Sobic001G305600--Sobic010G176200 Sobic003G332700 Sobic003G332700 Sobic001G073900--Sobic003G332700 Sobic001G073900--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic005G001700 Sobic005G001700 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic007G136200 Sobic007G136200 Sobic008G115900--Sobic007G136200 Sobic006G158100 Sobic006G158100 Sobic008G115900--Sobic006G158100 Sobic006G130300 Sobic006G130300 Sobic008G115900--Sobic006G130300 Sobic006G207800 Sobic006G207800 Sobic008G115900--Sobic006G207800 Sobic004G356400 Sobic004G356400 Sobic008G115900--Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic008G115900--Sobic001G017300 Sobic010G153900 Sobic010G153900 Sobic008G115900--Sobic010G153900 Sobic003G229300 Sobic003G229300 Sobic008G115900--Sobic003G229300 Sobic001G491000 Sobic001G491000 Sobic008G115900--Sobic001G491000 Sobic003G443500--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic003G443500--Sobic001G391900 Sobic003G443500--Sobic001G073900 Sobic003G443500--Sobic001G065600 Sobic002G102200 Sobic002G102200 Sobic003G443500--Sobic002G102200 Sobic003G443500--Sobic008G001900 Sobic006G101500 Sobic006G101500 Sobic003G443500--Sobic006G101500 Sobic003G443500--Sobic005G188600 Sobic001G317400 Sobic001G317400 Sobic003G443500--Sobic001G317400 Sobic007G140800 Sobic007G140800 Sobic004G327700--Sobic007G140800 Sobic009G125400 Sobic009G125400 Sobic004G327700--Sobic009G125400 Sobic004G274100 Sobic004G274100 Sobic004G327700--Sobic004G274100 Sobic001G069000 Sobic001G069000 Sobic004G327700--Sobic001G069000 Sobic004G327700--Sobic006G010900 Sobic007G009200 Sobic007G009200 Sobic004G327700--Sobic007G009200 Sobic006G016900 Sobic006G016900 Sobic004G327700--Sobic006G016900 Sobic004G327700--Sobic001G484400 Sobic002G172700 Sobic002G172700 Sobic004G327700--Sobic002G172700 Sobic004G347800--Sobic010G176200 Sobic004G347800--Sobic003G229300 Sobic004G347800--Sobic001G305600 Sobic008G130000 Sobic008G130000 Sobic004G347800--Sobic008G130000 Sobic004G347800--Sobic004G356400 Sobic004G347800--Sobic005G045000 Sobic003G313300 Sobic003G313300 Sobic004G347800--Sobic003G313300 Sobic003G021100 Sobic003G021100 Sobic004G347800--Sobic003G021100 Sobic006G093800 Sobic006G093800 Sobic004G347800--Sobic006G093800 Sobic006G010900--Sobic001G069000 Sobic003G387100 Sobic003G387100 Sobic006G010900--Sobic003G387100 Sobic006G210400 Sobic006G210400 Sobic006G010900--Sobic006G210400 Sobic003G160800 Sobic003G160800 Sobic006G010900--Sobic003G160800 Sobic007G085800 Sobic007G085800 Sobic006G010900--Sobic007G085800 Sobic006G010900--Sobic006G207800 Sobic008G116300 Sobic008G116300 Sobic006G010900--Sobic008G116300 Sobic003G077400 Sobic003G077400 Sobic006G010900--Sobic003G077400 Sobic003G412900 Sobic003G412900 Sobic006G010900--Sobic003G412900 Sobic008G001900--Sobic005G001700 Sobic008G001900--Sobic001G073900 Sobic008G001900--Sobic004G235600 Sobic003G085100 Sobic003G085100 Sobic008G001900--Sobic003G085100 Sobic008G001900--Sobic003G332700 Sobic004G054400 Sobic004G054400 Sobic008G001900--Sobic004G054400 Sobic005G063000 Sobic005G063000 Sobic008G001900--Sobic005G063000 Sobic005G204200 Sobic005G204200 Sobic008G001900--Sobic005G204200 Sobic001G465700 Sobic001G465700 Sobic008G001900--Sobic001G465700
Octagon: transcription factors


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