Gene annotation
| Transcriptome id | Sobic.007G126400.1,Sobic.007G126400.2 |
|---|---|
| Synonym | ATHB1, HAT5, Sb07g020300, ATHB-1, HD-ZIP-1, HB-1 |
| Functional annotation | CPuORF27 - conserved peptide uORF-containing transcript, expressed |
| UniProt | A0A1B6PHI9 , A0A1B6PHI2 |
| Pfam | PF02183 PF00046 PF02183 |
| Panther DB | PTHR24326 PTHR24326:SF188 |
| NCBI CDD | - |
| KEGG Orthology | K09338; homeobox-leucine zipper protein |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity |
Orthologs (automatic annotation)
| TAIR | AT3G01470 : homeobox 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os08g32080.1 : CPuORF27 - conserved peptide uORF-containing transcript, expressed |
| MaizeGDB (Corn) | Zm00025a053163 , Zm00025a031035 , Zm00025a032630 , Zm00025a001186 , Zm00025a006091 , Zm00025a021900 |
| Brachypodium | KQJ90092 , KQJ98272 |
| Barley | HORVU6Hr1G072810.4 , HORVU6Hr1G072810.6 , HORVU6Hr1G072810.7 , HORVU6Hr1G072810.5 , HORVU6Hr1G072810.2 , HORVU6Hr1G072810.3 , HORVU6Hr1G072810.1 |
| Wheat | TraesCS5A02G199300 , TraesCS6B02G321100 , TraesCS6D02G272000 , TraesCS6D02G272000 , TraesCS5A02G249000 , TraesCS5B02G197700 , TraesCS6A02G290800 , TraesCS5D02G205000 |
| Populus | - |
JBrowse
| Sobic.007G126400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G188600 | - | - |
| 2 | Sobic.001G484400 | copper-transporting ATPase PAA1, putative, expressed | K01533: P-type Cu2+ transporter |
| 3 | Sobic.003G003600 | similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed | - |
| 4 | Sobic.008G094000 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 5 | Sobic.001G073900 | lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 6 | Sobic.010G099700 | peptide transporter PTR2, putative, expressed | - |
| 7 | Sobic.005G110502 | - | - |
| 8 | Sobic.008G115900 | mitochondrial carrier protein, putative, expressed | - |
| 9 | Sobic.001G065600 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 10 | Sobic.004G144600 | - | - |
| 11 | Sobic.003G443500 | cyclase/dehydrase family protein, expressed | - |
| 12 | Sobic.003G229300 | NLI interacting factor-like phosphatase, putative, expressed | K17616: CTD small phosphatase-like protein 2 |
| 13 | Sobic.006G160400 | peroxisomal biogenesis factor 11, putative, expressed | - |
| 14 | Sobic.005G045000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed | K09480: digalactosyldiacylglycerol synthase |
| 15 | Sobic.006G205100 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 16 | Sobic.004G270600 | MYB family transcription factor, putative, expressed | - |
| 17 | Sobic.006G130800 | transporter family protein, putative, expressed | K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13 |
| 18 | Sobic.005G231500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed | - |
| 19 | Sobic.001G278800 | down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox associated leucine zipper, putative, expressed | K09338: homeobox-leucine zipper protein |
| 20 | Sobic.003G263001 | - | - |
Gene co-expression network
Octagon: transcription factors
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