Gene annotation
Transcriptome id Sobic.006G160400.1
Synonym Sb06g023730, PEX11B
Functional annotation peroxisomal biogenesis factor 11, putative, expressed
UniProt C5YCY1
Pfam PF05648
Panther DB PTHR12652 PTHR12652:SF17
NCBI CDD KOG4186; Peroxisomal biogenesis protein (peroxin)
KEGG Orthology -
Gene Ontology GO:0016559; peroxisome fission GO:0005779integral component of peroxisomal membrane


Orthologs (automatic annotation)
TAIR AT3G47430 : peroxin 11B
RAP-DB (Rice) LOC_Os04g45210.1 : peroxisomal biogenesis factor 11, putative, expressed
MaizeGDB (Corn) Zm00025a010434
Brachypodium KQJ83788
Barley HORVU2Hr1G091870.3 , HORVU2Hr1G091870.2 , HORVU2Hr1G091870.1 , HORVU2Hr1G091870.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
2 Sobic.005G110502 - -
3 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
4 Sobic.005G188600 - -
5 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
6 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
7 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
8 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
9 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
10 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
11 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
12 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
13 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase
14 Sobic.004G125700 isochorismatase family protein, putative, expressed -
15 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
16 Sobic.003G398800 expressed protein -
17 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
18 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
19 Sobic.004G238600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@starch synthase, putative, expressed K00703: starch synthase
20 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)


Gene co-expression network
sample Sobic006G160400 Sobic006G160400 Sobic004G283100 Sobic004G283100 Sobic006G160400--Sobic004G283100 Sobic005G110502 Sobic005G110502 Sobic006G160400--Sobic005G110502 Sobic001G329400 Sobic001G329400 Sobic006G160400--Sobic001G329400 Sobic005G188600 Sobic005G188600 Sobic006G160400--Sobic005G188600 Sobic003G024300 Sobic003G024300 Sobic006G160400--Sobic003G024300 Sobic004G308700 Sobic004G308700 Sobic006G160400--Sobic004G308700 Sobic002G036000 Sobic002G036000 Sobic006G160400--Sobic002G036000 Sobic008G053200 Sobic008G053200 Sobic006G160400--Sobic008G053200 Sobic008G115900 Sobic008G115900 Sobic006G160400--Sobic008G115900 Sobic004G272100 Sobic004G272100 Sobic004G283100--Sobic004G272100 Sobic004G283100--Sobic008G053200 Sobic004G305800 Sobic004G305800 Sobic004G283100--Sobic004G305800 Sobic004G238600 Sobic004G238600 Sobic004G283100--Sobic004G238600 Sobic010G201700 Sobic010G201700 Sobic004G283100--Sobic010G201700 Sobic004G283100--Sobic001G329400 Sobic002G370600 Sobic002G370600 Sobic004G283100--Sobic002G370600 Sobic009G043000 Sobic009G043000 Sobic004G283100--Sobic009G043000 Sobic009G129300 Sobic009G129300 Sobic004G283100--Sobic009G129300 Sobic005G110502--Sobic001G329400 Sobic009G140800 Sobic009G140800 Sobic005G110502--Sobic009G140800 Sobic005G110502--Sobic004G283100 Sobic005G110502--Sobic006G160400 Sobic004G125700 Sobic004G125700 Sobic005G110502--Sobic004G125700 Sobic005G110502--Sobic004G238600 Sobic002G098800 Sobic002G098800 Sobic005G110502--Sobic002G098800 Sobic005G110502--Sobic008G115900 Sobic008G104601 Sobic008G104601 Sobic005G110502--Sobic008G104601 Sobic001G329400--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic001G065600 Sobic001G065600 Sobic005G188600--Sobic001G065600 Sobic001G158900 Sobic001G158900 Sobic005G188600--Sobic001G158900 Sobic006G188000 Sobic006G188000 Sobic005G188600--Sobic006G188000 Sobic003G443500 Sobic003G443500 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic006G101500 Sobic006G101500 Sobic005G188600--Sobic006G101500 Sobic005G188600--Sobic008G115900 Sobic001G098301 Sobic001G098301 Sobic005G188600--Sobic001G098301 Sobic005G188600--Sobic006G160400 Sobic007G009200 Sobic007G009200 Sobic003G024300--Sobic007G009200 Sobic006G077400 Sobic006G077400 Sobic003G024300--Sobic006G077400 Sobic003G024300--Sobic001G329400 Sobic003G024300--Sobic001G491000 Sobic003G024300--Sobic009G104800 Sobic003G398800 Sobic003G398800 Sobic003G024300--Sobic003G398800 Sobic003G024300--Sobic004G125700 Sobic003G024300--Sobic007G161500 Sobic003G024300--Sobic010G201700 Sobic004G308700--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic004G308700--Sobic008G066100 Sobic001G519800 Sobic001G519800 Sobic004G308700--Sobic001G519800 Sobic004G308700--Sobic010G201700 Sobic001G425400 Sobic001G425400 Sobic004G308700--Sobic001G425400 Sobic003G431700 Sobic003G431700 Sobic004G308700--Sobic003G431700 Sobic001G102800 Sobic001G102800 Sobic004G308700--Sobic001G102800 Sobic007G004800 Sobic007G004800 Sobic004G308700--Sobic007G004800 Sobic002G051100 Sobic002G051100 Sobic004G308700--Sobic002G051100 Sobic002G036000--Sobic008G053200 Sobic002G036000--Sobic001G102800 Sobic002G036000--Sobic004G308700 Sobic002G036000--Sobic001G519800 Sobic002G036000--Sobic003G431700 Sobic002G036000--Sobic006G101500 Sobic002G036000--Sobic003G443500 Sobic002G036000--Sobic004G272100 Sobic002G036000--Sobic008G066100 Sobic003G431900 Sobic003G431900 Sobic008G053200--Sobic003G431900 Sobic008G053200--Sobic001G519800 Sobic003G234200 Sobic003G234200 Sobic008G053200--Sobic003G234200 Sobic008G053200--Sobic002G036000 Sobic008G053200--Sobic004G238600 Sobic008G053200--Sobic004G283100 Sobic008G053200--Sobic004G272100 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600 Sobic007G136200 Sobic007G136200 Sobic008G115900--Sobic007G136200 Sobic006G158100 Sobic006G158100 Sobic008G115900--Sobic006G158100 Sobic006G130300 Sobic006G130300 Sobic008G115900--Sobic006G130300 Sobic006G207800 Sobic006G207800 Sobic008G115900--Sobic006G207800 Sobic004G356400 Sobic004G356400 Sobic008G115900--Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic008G115900--Sobic001G017300 Sobic010G153900 Sobic010G153900 Sobic008G115900--Sobic010G153900 Sobic003G229300 Sobic003G229300 Sobic008G115900--Sobic003G229300 Sobic008G115900--Sobic001G491000
Octagon: transcription factors


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