Gene annotation
Transcriptome id Sobic.001G158900.1,Sobic.001G158900.2,Sobic.001G158900.3,Sobic.001G158900.4
Synonym PIL5, Sb01g013843, PIF1
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1Z5S5S3 , C5WRA0 , A0A1B6QJ66
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF3
NCBI CDD KOG4304; Transcriptional repressors of the hairy/E(spl) family (contains HLH)
KEGG Orthology K16189; phytochrome-interacting factor 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20180 : phytochrome interacting factor 3-like 5
RAP-DB (Rice) LOC_Os03g43810.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004664 , Zm00025a007316
Brachypodium KQK14025
Barley HORVU5Hr1G093310.22 , HORVU5Hr1G093310.23 , HORVU5Hr1G093310.20 , HORVU5Hr1G093310.21 , HORVU5Hr1G093310.17 , HORVU5Hr1G093310.16 , HORVU5Hr1G093310.15 , HORVU5Hr1G093310.14 , HORVU5Hr1G093310.13 , HORVU5Hr1G093310.12 , HORVU5Hr1G093310.11 , HORVU5Hr1G093310.10 , HORVU5Hr1G093310.19 , HORVU5Hr1G093310.18 , HORVU5Hr1G093310.9 , HORVU5Hr1G093310.8 , HORVU5Hr1G093310.7 , HORVU5Hr1G093310.6 , HORVU5Hr1G093310.5 , HORVU5Hr1G093310.4 , HORVU5Hr1G093310.3 , HORVU5Hr1G093310.2 , HORVU5Hr1G093310.1 , HORVU5Hr1G011780.15 , HORVU5Hr1G011780.11 , HORVU5Hr1G011780.12 , HORVU5Hr1G011780.13 , HORVU5Hr1G011780.7 , HORVU5Hr1G011780.5 , HORVU5Hr1G011780.3 , HORVU5Hr1G011780.1
Wheat TraesCS5D02G386500 , TraesCS5D02G386500 , TraesCS5A02G376500 , TraesCS5D02G060300 , TraesCS5B02G380200 , TraesCS5A02G049600 , TraesCS5B02G054800 , TraesCS5B02G054800
Populus PNT47990 , PNT47989 , PNT47991 , PNT47993 , PNT47992 , PNT47995 , PNT47994


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cDNA sequences
Sobic.001G158900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
2 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
3 Sobic.005G188600 - -
4 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
5 Sobic.006G188000 expressed protein -
6 Sobic.006G010900 expressed protein -
7 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
8 Sobic.005G101300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
9 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
10 Sobic.003G443500 cyclase/dehydrase family protein, expressed -
11 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
12 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
13 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
14 Sobic.003G068800 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
15 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
17 Sobic.008G116300 expressed protein -
18 Sobic.006G101500 expressed protein -
19 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
20 Sobic.001G391900 nifU, putative, expressed -


Gene co-expression network
sample Sobic001G158900 Sobic001G158900 Sobic001G065600 Sobic001G065600 Sobic001G158900--Sobic001G065600 Sobic002G036000 Sobic002G036000 Sobic001G158900--Sobic002G036000 Sobic005G188600 Sobic005G188600 Sobic001G158900--Sobic005G188600 Sobic001G003200 Sobic001G003200 Sobic001G158900--Sobic001G003200 Sobic006G188000 Sobic006G188000 Sobic001G158900--Sobic006G188000 Sobic006G010900 Sobic006G010900 Sobic001G158900--Sobic006G010900 Sobic008G117000 Sobic008G117000 Sobic001G158900--Sobic008G117000 Sobic005G101300 Sobic005G101300 Sobic001G158900--Sobic005G101300 Sobic002G403600 Sobic002G403600 Sobic001G158900--Sobic002G403600 Sobic001G065600--Sobic001G158900 Sobic001G073900 Sobic001G073900 Sobic001G065600--Sobic001G073900 Sobic001G065600--Sobic005G188600 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic001G065600--Sobic002G036000 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600 Sobic008G053200 Sobic008G053200 Sobic002G036000--Sobic008G053200 Sobic001G102800 Sobic001G102800 Sobic002G036000--Sobic001G102800 Sobic004G308700 Sobic004G308700 Sobic002G036000--Sobic004G308700 Sobic001G519800 Sobic001G519800 Sobic002G036000--Sobic001G519800 Sobic003G431700 Sobic003G431700 Sobic002G036000--Sobic003G431700 Sobic006G101500 Sobic006G101500 Sobic002G036000--Sobic006G101500 Sobic003G443500 Sobic003G443500 Sobic002G036000--Sobic003G443500 Sobic004G272100 Sobic004G272100 Sobic002G036000--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G036000--Sobic008G066100 Sobic005G188600--Sobic001G065600 Sobic005G188600--Sobic001G158900 Sobic005G188600--Sobic006G188000 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic005G188600--Sobic006G101500 Sobic008G115900 Sobic008G115900 Sobic005G188600--Sobic008G115900 Sobic001G098301 Sobic001G098301 Sobic005G188600--Sobic001G098301 Sobic006G160400 Sobic006G160400 Sobic005G188600--Sobic006G160400 Sobic009G056700 Sobic009G056700 Sobic001G003200--Sobic009G056700 Sobic007G053800 Sobic007G053800 Sobic001G003200--Sobic007G053800 Sobic004G121400 Sobic004G121400 Sobic001G003200--Sobic004G121400 Sobic007G150100 Sobic007G150100 Sobic001G003200--Sobic007G150100 Sobic001G003200--Sobic006G188000 Sobic003G398800 Sobic003G398800 Sobic001G003200--Sobic003G398800 Sobic001G048400 Sobic001G048400 Sobic001G003200--Sobic001G048400 Sobic001G003200--Sobic003G431700 Sobic001G504400 Sobic001G504400 Sobic001G003200--Sobic001G504400 Sobic010G245200 Sobic010G245200 Sobic006G188000--Sobic010G245200 Sobic010G058200 Sobic010G058200 Sobic006G188000--Sobic010G058200 Sobic006G188000--Sobic006G114900 Sobic002G370600 Sobic002G370600 Sobic006G188000--Sobic002G370600 Sobic006G188000--Sobic003G431700 Sobic006G188000--Sobic007G053800 Sobic001G517700 Sobic001G517700 Sobic006G188000--Sobic001G517700 Sobic006G207800 Sobic006G207800 Sobic006G188000--Sobic006G207800 Sobic006G102000 Sobic006G102000 Sobic006G188000--Sobic006G102000 Sobic001G069000 Sobic001G069000 Sobic006G010900--Sobic001G069000 Sobic003G387100 Sobic003G387100 Sobic006G010900--Sobic003G387100 Sobic006G210400 Sobic006G210400 Sobic006G010900--Sobic006G210400 Sobic003G160800 Sobic003G160800 Sobic006G010900--Sobic003G160800 Sobic007G085800 Sobic007G085800 Sobic006G010900--Sobic007G085800 Sobic006G010900--Sobic006G207800 Sobic008G116300 Sobic008G116300 Sobic006G010900--Sobic008G116300 Sobic003G077400 Sobic003G077400 Sobic006G010900--Sobic003G077400 Sobic003G412900 Sobic003G412900 Sobic006G010900--Sobic003G412900 Sobic002G324500 Sobic002G324500 Sobic008G117000--Sobic002G324500 Sobic008G117000--Sobic001G073900 Sobic003G036200 Sobic003G036200 Sobic008G117000--Sobic003G036200 Sobic001G134100 Sobic001G134100 Sobic008G117000--Sobic001G134100 Sobic004G215800 Sobic004G215800 Sobic008G117000--Sobic004G215800 Sobic003G367500 Sobic003G367500 Sobic008G117000--Sobic003G367500 Sobic007G105500 Sobic007G105500 Sobic008G117000--Sobic007G105500 Sobic003G332700 Sobic003G332700 Sobic008G117000--Sobic003G332700 Sobic003G185900 Sobic003G185900 Sobic008G117000--Sobic003G185900 Sobic010G039500 Sobic010G039500 Sobic005G101300--Sobic010G039500 Sobic005G101300--Sobic003G367500 Sobic003G024300 Sobic003G024300 Sobic005G101300--Sobic003G024300 Sobic007G009200 Sobic007G009200 Sobic005G101300--Sobic007G009200 Sobic005G101300--Sobic003G398800 Sobic001G329400 Sobic001G329400 Sobic005G101300--Sobic001G329400 Sobic004G356400 Sobic004G356400 Sobic005G101300--Sobic004G356400 Sobic005G101300--Sobic001G134100 Sobic005G101300--Sobic007G105500 Sobic001G531500 Sobic001G531500 Sobic002G403600--Sobic001G531500 Sobic004G027600 Sobic004G027600 Sobic002G403600--Sobic004G027600 Sobic006G064100 Sobic006G064100 Sobic002G403600--Sobic006G064100 Sobic002G403600--Sobic001G073900 Sobic002G403600--Sobic004G356400 Sobic002G403600--Sobic003G036200 Sobic006G120500 Sobic006G120500 Sobic002G403600--Sobic006G120500 Sobic005G001700 Sobic005G001700 Sobic002G403600--Sobic005G001700 Sobic010G251700 Sobic010G251700 Sobic002G403600--Sobic010G251700
Octagon: transcription factors


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