Gene annotation
Transcriptome id Sobic.003G068800.1
Synonym HCT, Sb03g005860
Functional annotation Protein O-methyltransferase ZRP4 (Zm) (PubMedID : 27208977)
transferase family protein, putative, expressed
UniProt A0A1B6Q1R3
Pfam PF02458
Panther DB PTHR31642 PTHR31642:SF16
NCBI CDD -
KEGG Orthology K13065; E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT5G48930 : hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
RAP-DB (Rice) LOC_Os08g43040.2 : transferase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023429 , Zm00025a023433 , Zm00025a023432
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -
2 Sobic.001G102300 homeobox domain containing protein, expressed -
3 Sobic.001G377500 POEI47 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
4 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
5 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
6 Sobic.002G359600 GA22009-PA, putative, expressed -
7 Sobic.005G188600 - -
8 Sobic.001G098301 - -
9 Sobic.007G204900 extracellular ligand-gated ion channel, putative, expressed -
10 Sobic.008G183200 LOL3, putative, expressed -
11 Sobic.006G101500 expressed protein -
12 Sobic.005G111500 FHA domain containing protein, putative, expressed -
13 Sobic.010G214000 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
14 Sobic.010G225600 - -
15 Sobic.003G305000 Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
16 Sobic.001G300201 - -
17 Sobic.001G517700 catalase domain containing protein, expressed K03781: katE, CAT, catB, catalase
18 Sobic.004G298900 OR, putative, expressed -
19 Sobic.004G122200 expressed protein -
20 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase


Gene co-expression network
sample Sobic003G068800 Sobic003G068800 Sobic003G108600 Sobic003G108600 Sobic003G068800--Sobic003G108600 Sobic001G102300 Sobic001G102300 Sobic003G068800--Sobic001G102300 Sobic001G377500 Sobic001G377500 Sobic003G068800--Sobic001G377500 Sobic001G158900 Sobic001G158900 Sobic003G068800--Sobic001G158900 Sobic001G065600 Sobic001G065600 Sobic003G068800--Sobic001G065600 Sobic002G359600 Sobic002G359600 Sobic003G068800--Sobic002G359600 Sobic005G188600 Sobic005G188600 Sobic003G068800--Sobic005G188600 Sobic001G098301 Sobic001G098301 Sobic003G068800--Sobic001G098301 Sobic007G204900 Sobic007G204900 Sobic003G068800--Sobic007G204900 Sobic010G214000 Sobic010G214000 Sobic003G108600--Sobic010G214000 Sobic009G189000 Sobic009G189000 Sobic003G108600--Sobic009G189000 Sobic003G108600--Sobic003G068800 Sobic003G108600--Sobic001G102300 Sobic010G225600 Sobic010G225600 Sobic003G108600--Sobic010G225600 Sobic006G258700 Sobic006G258700 Sobic003G108600--Sobic006G258700 Sobic006G135100 Sobic006G135100 Sobic003G108600--Sobic006G135100 Sobic004G113800 Sobic004G113800 Sobic003G108600--Sobic004G113800 Sobic001G418700 Sobic001G418700 Sobic003G108600--Sobic001G418700 Sobic009G034600 Sobic009G034600 Sobic001G102300--Sobic009G034600 Sobic001G102300--Sobic003G108600 Sobic001G102300--Sobic003G068800 Sobic001G102300--Sobic010G214000 Sobic004G096100 Sobic004G096100 Sobic001G102300--Sobic004G096100 Sobic001G351400 Sobic001G351400 Sobic001G102300--Sobic001G351400 Sobic001G300201 Sobic001G300201 Sobic001G102300--Sobic001G300201 Sobic004G359200 Sobic004G359200 Sobic001G102300--Sobic004G359200 Sobic003G292600 Sobic003G292600 Sobic001G102300--Sobic003G292600 Sobic005G127000 Sobic005G127000 Sobic001G377500--Sobic005G127000 Sobic002G001800 Sobic002G001800 Sobic001G377500--Sobic002G001800 Sobic008G183200 Sobic008G183200 Sobic001G377500--Sobic008G183200 Sobic001G377500--Sobic003G068800 Sobic007G059500 Sobic007G059500 Sobic001G377500--Sobic007G059500 Sobic004G122200 Sobic004G122200 Sobic001G377500--Sobic004G122200 Sobic010G241300 Sobic010G241300 Sobic001G377500--Sobic010G241300 Sobic010G218600 Sobic010G218600 Sobic001G377500--Sobic010G218600 Sobic001G377500--Sobic010G225600 Sobic001G158900--Sobic001G065600 Sobic002G036000 Sobic002G036000 Sobic001G158900--Sobic002G036000 Sobic001G158900--Sobic005G188600 Sobic001G003200 Sobic001G003200 Sobic001G158900--Sobic001G003200 Sobic006G188000 Sobic006G188000 Sobic001G158900--Sobic006G188000 Sobic006G010900 Sobic006G010900 Sobic001G158900--Sobic006G010900 Sobic008G117000 Sobic008G117000 Sobic001G158900--Sobic008G117000 Sobic005G101300 Sobic005G101300 Sobic001G158900--Sobic005G101300 Sobic002G403600 Sobic002G403600 Sobic001G158900--Sobic002G403600 Sobic001G065600--Sobic001G158900 Sobic001G073900 Sobic001G073900 Sobic001G065600--Sobic001G073900 Sobic001G065600--Sobic005G188600 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic001G065600--Sobic002G036000 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600 Sobic003G442700 Sobic003G442700 Sobic002G359600--Sobic003G442700 Sobic002G359600--Sobic003G068800 Sobic009G121000 Sobic009G121000 Sobic002G359600--Sobic009G121000 Sobic008G062500 Sobic008G062500 Sobic002G359600--Sobic008G062500 Sobic002G347600 Sobic002G347600 Sobic002G359600--Sobic002G347600 Sobic006G101500 Sobic006G101500 Sobic002G359600--Sobic006G101500 Sobic006G260800 Sobic006G260800 Sobic002G359600--Sobic006G260800 Sobic002G359600--Sobic001G098301 Sobic010G214100 Sobic010G214100 Sobic002G359600--Sobic010G214100 Sobic005G188600--Sobic001G065600 Sobic005G188600--Sobic001G158900 Sobic005G188600--Sobic006G188000 Sobic003G443500 Sobic003G443500 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic005G188600--Sobic006G101500 Sobic008G115900 Sobic008G115900 Sobic005G188600--Sobic008G115900 Sobic005G188600--Sobic001G098301 Sobic006G160400 Sobic006G160400 Sobic005G188600--Sobic006G160400 Sobic010G043800 Sobic010G043800 Sobic001G098301--Sobic010G043800 Sobic004G001300 Sobic004G001300 Sobic001G098301--Sobic004G001300 Sobic001G098301--Sobic005G188600 Sobic001G048400 Sobic001G048400 Sobic001G098301--Sobic001G048400 Sobic001G098301--Sobic009G121000 Sobic006G038500 Sobic006G038500 Sobic001G098301--Sobic006G038500 Sobic002G000600 Sobic002G000600 Sobic001G098301--Sobic002G000600 Sobic001G098301--Sobic006G101500 Sobic007G150100 Sobic007G150100 Sobic001G098301--Sobic007G150100 Sobic007G204900--Sobic004G001300 Sobic007G213700 Sobic007G213700 Sobic007G204900--Sobic007G213700 Sobic008G011200 Sobic008G011200 Sobic007G204900--Sobic008G011200 Sobic003G305000 Sobic003G305000 Sobic007G204900--Sobic003G305000 Sobic010G096300 Sobic010G096300 Sobic007G204900--Sobic010G096300 Sobic007G204900--Sobic003G068800 Sobic006G249050 Sobic006G249050 Sobic007G204900--Sobic006G249050 Sobic007G204900--Sobic001G065600 Sobic007G204900--Sobic001G098301
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.