Gene annotation
Transcriptome id Sobic.003G305000.1
Synonym Sb03g035350, TCP5,TCP-like gene;SbTCP9;SbTCP9
Functional annotation Unnamed (PubMedID : 24676859)
CIN-like (ClassII) Subclade 9 TCP (PubMedID : 21444336)
"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941)
"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054)
TCP family transcription factor, putative, expressed
UniProt C5XKV1
Pfam PF03634
Panther DB PTHR31072 PTHR31072:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60970 : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
RAP-DB (Rice) LOC_Os01g55750.3 : TCP family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a045028 , Zm00025a016162 , Zm00025a027454
Brachypodium KQK09878 , PNT72901
Barley HORVU1Hr1G077080.1 , HORVU1Hr1G077080.3 , HORVU1Hr1G077080.2 , HORVU3Hr1G073830.2 , HORVU3Hr1G073830.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G110700 nuclear transport factor, putative, expressed -
2 Sobic.007G213700 -(PubMedID : 26976818)@aminotransferase, putative, expressed K00830: alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase
3 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase
4 Sobic.007G204900 extracellular ligand-gated ion channel, putative, expressed -
5 Sobic.007G152600 cytochrome P450, putative, expressed -
6 Sobic.007G132000 MYB family transcription factor, putative, expressed -
7 Sobic.003G068800 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
8 Sobic.010G096300 -(PubMedID : 22968911)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
9 Sobic.004G122200 expressed protein -
10 Sobic.008G183200 LOL3, putative, expressed -
11 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
12 Sobic.006G249050 - -
13 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
14 Sobic.001G102300 homeobox domain containing protein, expressed -
15 Sobic.001G098301 - -
16 Sobic.002G000700 expressed protein -
17 Sobic.009G055800 expressed protein -
18 Sobic.006G135100 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
19 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
20 Sobic.001G118100 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic003G305000 Sobic003G305000 Sobic003G110700 Sobic003G110700 Sobic003G305000--Sobic003G110700 Sobic007G213700 Sobic007G213700 Sobic003G305000--Sobic007G213700 Sobic004G001300 Sobic004G001300 Sobic003G305000--Sobic004G001300 Sobic007G204900 Sobic007G204900 Sobic003G305000--Sobic007G204900 Sobic007G152600 Sobic007G152600 Sobic003G305000--Sobic007G152600 Sobic007G132000 Sobic007G132000 Sobic003G305000--Sobic007G132000 Sobic003G068800 Sobic003G068800 Sobic003G305000--Sobic003G068800 Sobic010G096300 Sobic010G096300 Sobic003G305000--Sobic010G096300 Sobic004G122200 Sobic004G122200 Sobic003G305000--Sobic004G122200 Sobic003G110700--Sobic003G305000 Sobic008G062500 Sobic008G062500 Sobic003G110700--Sobic008G062500 Sobic003G137100 Sobic003G137100 Sobic003G110700--Sobic003G137100 Sobic002G114700 Sobic002G114700 Sobic003G110700--Sobic002G114700 Sobic009G055800 Sobic009G055800 Sobic003G110700--Sobic009G055800 Sobic008G183200 Sobic008G183200 Sobic003G110700--Sobic008G183200 Sobic003G110700--Sobic004G001300 Sobic002G104000 Sobic002G104000 Sobic003G110700--Sobic002G104000 Sobic004G186200 Sobic004G186200 Sobic003G110700--Sobic004G186200 Sobic007G213700--Sobic007G204900 Sobic002G000700 Sobic002G000700 Sobic007G213700--Sobic002G000700 Sobic007G213700--Sobic003G305000 Sobic004G201700 Sobic004G201700 Sobic007G213700--Sobic004G201700 Sobic006G249050 Sobic006G249050 Sobic007G213700--Sobic006G249050 Sobic007G213700--Sobic004G122200 Sobic001G003200 Sobic001G003200 Sobic007G213700--Sobic001G003200 Sobic006G135100 Sobic006G135100 Sobic007G213700--Sobic006G135100 Sobic001G158900 Sobic001G158900 Sobic007G213700--Sobic001G158900 Sobic001G118100 Sobic001G118100 Sobic004G001300--Sobic001G118100 Sobic004G001300--Sobic007G204900 Sobic008G001000 Sobic008G001000 Sobic004G001300--Sobic008G001000 Sobic003G442700 Sobic003G442700 Sobic004G001300--Sobic003G442700 Sobic003G161000 Sobic003G161000 Sobic004G001300--Sobic003G161000 Sobic001G098301 Sobic001G098301 Sobic004G001300--Sobic001G098301 Sobic003G003600 Sobic003G003600 Sobic004G001300--Sobic003G003600 Sobic004G001300--Sobic003G137100 Sobic001G060401 Sobic001G060401 Sobic004G001300--Sobic001G060401 Sobic007G204900--Sobic004G001300 Sobic007G204900--Sobic007G213700 Sobic008G011200 Sobic008G011200 Sobic007G204900--Sobic008G011200 Sobic007G204900--Sobic003G305000 Sobic007G204900--Sobic010G096300 Sobic007G204900--Sobic003G068800 Sobic007G204900--Sobic006G249050 Sobic001G065600 Sobic001G065600 Sobic007G204900--Sobic001G065600 Sobic007G204900--Sobic001G098301 Sobic007G152600--Sobic003G305000 Sobic007G152600--Sobic001G065600 Sobic007G152600--Sobic003G110700 Sobic003G443500 Sobic003G443500 Sobic007G152600--Sobic003G443500 Sobic007G152600--Sobic004G001300 Sobic002G293000 Sobic002G293000 Sobic007G152600--Sobic002G293000 Sobic006G101500 Sobic006G101500 Sobic007G152600--Sobic006G101500 Sobic005G188600 Sobic005G188600 Sobic007G152600--Sobic005G188600 Sobic002G036000 Sobic002G036000 Sobic007G152600--Sobic002G036000 Sobic003G211500 Sobic003G211500 Sobic007G132000--Sobic003G211500 Sobic007G132000--Sobic003G305000 Sobic001G536800 Sobic001G536800 Sobic007G132000--Sobic001G536800 Sobic001G010100 Sobic001G010100 Sobic007G132000--Sobic001G010100 Sobic009G196800 Sobic009G196800 Sobic007G132000--Sobic009G196800 Sobic009G085500 Sobic009G085500 Sobic007G132000--Sobic009G085500 Sobic006G103400 Sobic006G103400 Sobic007G132000--Sobic006G103400 Sobic008G066100 Sobic008G066100 Sobic007G132000--Sobic008G066100 Sobic004G308700 Sobic004G308700 Sobic007G132000--Sobic004G308700 Sobic003G108600 Sobic003G108600 Sobic003G068800--Sobic003G108600 Sobic001G102300 Sobic001G102300 Sobic003G068800--Sobic001G102300 Sobic001G377500 Sobic001G377500 Sobic003G068800--Sobic001G377500 Sobic003G068800--Sobic001G158900 Sobic003G068800--Sobic001G065600 Sobic002G359600 Sobic002G359600 Sobic003G068800--Sobic002G359600 Sobic003G068800--Sobic005G188600 Sobic003G068800--Sobic001G098301 Sobic003G068800--Sobic007G204900 Sobic010G096300--Sobic006G103400 Sobic004G227200 Sobic004G227200 Sobic010G096300--Sobic004G227200 Sobic006G093900 Sobic006G093900 Sobic010G096300--Sobic006G093900 Sobic001G233400 Sobic001G233400 Sobic010G096300--Sobic001G233400 Sobic003G435800 Sobic003G435800 Sobic010G096300--Sobic003G435800 Sobic007G223500 Sobic007G223500 Sobic010G096300--Sobic007G223500 Sobic001G035800 Sobic001G035800 Sobic010G096300--Sobic001G035800 Sobic001G069000 Sobic001G069000 Sobic010G096300--Sobic001G069000 Sobic009G164300 Sobic009G164300 Sobic010G096300--Sobic009G164300 Sobic004G122200--Sobic008G183200 Sobic005G127000 Sobic005G127000 Sobic004G122200--Sobic005G127000 Sobic010G241300 Sobic010G241300 Sobic004G122200--Sobic010G241300 Sobic004G122200--Sobic008G066100 Sobic010G164200 Sobic010G164200 Sobic004G122200--Sobic010G164200 Sobic008G015100 Sobic008G015100 Sobic004G122200--Sobic008G015100 Sobic001G068301 Sobic001G068301 Sobic004G122200--Sobic001G068301 Sobic001G338700 Sobic001G338700 Sobic004G122200--Sobic001G338700 Sobic004G122200--Sobic001G377500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.