Gene annotation
| Transcriptome id | Sobic.007G152600.1 |
|---|---|
| Synonym | Sb07g022650, CYP76C2 |
| Functional annotation | cytochrome P450, putative, expressed |
| UniProt | C5YM67 |
| Pfam | PF00067 |
| Panther DB | PTHR24298 PTHR24298:SF81 |
| NCBI CDD | KOG0156; Cytochrome P450 CYP2 subfamily |
| KEGG Orthology | - |
| Gene Ontology | GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0005506iron ion binding |
Orthologs (automatic annotation)
| TAIR | AT2G45550 : cytochrome P450, family 76, subfamily C, polypeptide 4 |
|---|---|
| RAP-DB (Rice) | LOC_Os08g39730.1 : cytochrome P450, putative, expressed |
| MaizeGDB (Corn) | Zm00025a017339 , Zm00025a004587 |
| Brachypodium | KQK17626 , PNT68248 |
| Barley | HORVU6Hr1G010740.4 , HORVU6Hr1G010740.5 , HORVU6Hr1G010740.2 , HORVU6Hr1G010740.3 , HORVU6Hr1G010740.1 , HORVU5Hr1G067360.3 , HORVU5Hr1G067360.2 , HORVU7Hr1G021650.1 , HORVU7Hr1G021650.3 , HORVU7Hr1G021650.2 , HORVU7Hr1G021650.5 , HORVU7Hr1G021650.4 , HORVU7Hr1G021650.6 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G152600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G305000 | Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 2 | Sobic.001G065600 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 3 | Sobic.003G110700 | nuclear transport factor, putative, expressed | - |
| 4 | Sobic.003G443500 | cyclase/dehydrase family protein, expressed | - |
| 5 | Sobic.004G001300 | -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed | K15893: glycerate dehydrogenase |
| 6 | Sobic.002G293000 | IDD5(PubMedID : 24676859)@ZOS9-17 - C2H2 zinc finger protein, expressed | - |
| 7 | Sobic.006G101500 | expressed protein | - |
| 8 | Sobic.005G188600 | - | - |
| 9 | Sobic.002G036000 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 10 | Sobic.001G073900 | lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 11 | Sobic.001G158900 | helix-loop-helix DNA-binding domain containing protein, expressed | K16189: phytochrome-interacting factor 4 |
| 12 | Sobic.003G108600 | heat shock protein DnaJ, putative, expressed | - |
| 13 | Sobic.004G235600 | mTERF family protein, expressed | K15032: mTERF domain-containing protein, mitochondrial |
| 14 | Sobic.003G068800 | Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed | K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase |
| 15 | Sobic.003G442700 | - | - |
| 16 | Sobic.003G003600 | similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed | - |
| 17 | Sobic.001G418700 | SLT1 protein, putative, expressed | - |
| 18 | Sobic.005G111500 | FHA domain containing protein, putative, expressed | - |
| 19 | Sobic.001G183000 | peptidase M50 family protein, putative, expressed | - |
| 20 | Sobic.001G353250 | - | - |
Gene co-expression network
Octagon: transcription factors
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