Gene annotation
Transcriptome id Sobic.003G443500.1
Synonym Sb03g047320
Functional annotation cyclase/dehydrase family protein, expressed
UniProt C5XJD3
Pfam PF03364
Panther DB PTHR34060 PTHR34060:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01650 : Polyketide cyclase / dehydrase and lipid transport protein
RAP-DB (Rice) LOC_Os01g74010.1 : cyclase/dehydrase family protein, expressed
MaizeGDB (Corn) Zm00025a025833
Brachypodium KQK11747
Barley HORVU3Hr1G114370.3 , HORVU3Hr1G114370.2 , HORVU3Hr1G114370.9 , HORVU3Hr1G114370.8 , HORVU3Hr1G114370.4 , HORVU3Hr1G114370.1 , HORVU3Hr1G114370.7 , HORVU3Hr1G114370.11 , HORVU3Hr1G114370.10 , HORVU3Hr1G114370.6
Wheat TraesCS3A02G524400 , TraesCS3A02G524400 , TraesCS3A02G524300 , TraesCS3D02G529700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
2 Sobic.001G391900 nifU, putative, expressed -
3 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
4 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
5 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
6 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
7 Sobic.006G101500 expressed protein -
8 Sobic.005G188600 - -
9 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.008G116300 expressed protein -
11 Sobic.006G260800 phosphatidate cytidylyltransferase, putative, expressed K18678: phytol kinase
12 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
13 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
14 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
15 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
16 Sobic.006G188000 expressed protein -
17 Sobic.001G129000 DnaK family protein, putative, expressed -
18 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
19 Sobic.004G298900 OR, putative, expressed -
20 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase


Gene co-expression network
sample Sobic003G443500 Sobic003G443500 Sobic002G036000 Sobic002G036000 Sobic003G443500--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic003G443500--Sobic001G391900 Sobic001G073900 Sobic001G073900 Sobic003G443500--Sobic001G073900 Sobic001G065600 Sobic001G065600 Sobic003G443500--Sobic001G065600 Sobic002G102200 Sobic002G102200 Sobic003G443500--Sobic002G102200 Sobic008G001900 Sobic008G001900 Sobic003G443500--Sobic008G001900 Sobic006G101500 Sobic006G101500 Sobic003G443500--Sobic006G101500 Sobic005G188600 Sobic005G188600 Sobic003G443500--Sobic005G188600 Sobic001G317400 Sobic001G317400 Sobic003G443500--Sobic001G317400 Sobic008G053200 Sobic008G053200 Sobic002G036000--Sobic008G053200 Sobic001G102800 Sobic001G102800 Sobic002G036000--Sobic001G102800 Sobic004G308700 Sobic004G308700 Sobic002G036000--Sobic004G308700 Sobic001G519800 Sobic001G519800 Sobic002G036000--Sobic001G519800 Sobic003G431700 Sobic003G431700 Sobic002G036000--Sobic003G431700 Sobic002G036000--Sobic006G101500 Sobic002G036000--Sobic003G443500 Sobic004G272100 Sobic004G272100 Sobic002G036000--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G036000--Sobic008G066100 Sobic001G391900--Sobic002G102200 Sobic006G093900 Sobic006G093900 Sobic001G391900--Sobic006G093900 Sobic002G030500 Sobic002G030500 Sobic001G391900--Sobic002G030500 Sobic001G391900--Sobic002G036000 Sobic006G188000 Sobic006G188000 Sobic001G391900--Sobic006G188000 Sobic009G059300 Sobic009G059300 Sobic001G391900--Sobic009G059300 Sobic001G391900--Sobic001G102800 Sobic004G227200 Sobic004G227200 Sobic001G391900--Sobic004G227200 Sobic003G387100 Sobic003G387100 Sobic001G391900--Sobic003G387100 Sobic003G332700 Sobic003G332700 Sobic001G073900--Sobic003G332700 Sobic001G073900--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G073900--Sobic001G065600 Sobic001G531500 Sobic001G531500 Sobic001G073900--Sobic001G531500 Sobic005G001700 Sobic005G001700 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic001G158900 Sobic001G158900 Sobic001G065600--Sobic001G158900 Sobic001G065600--Sobic001G073900 Sobic001G065600--Sobic005G188600 Sobic006G010900 Sobic006G010900 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic001G065600--Sobic002G036000 Sobic001G003200 Sobic001G003200 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600 Sobic002G102200--Sobic006G101500 Sobic002G102200--Sobic001G391900 Sobic002G102200--Sobic003G387100 Sobic001G124800 Sobic001G124800 Sobic002G102200--Sobic001G124800 Sobic010G058200 Sobic010G058200 Sobic002G102200--Sobic010G058200 Sobic006G050400 Sobic006G050400 Sobic002G102200--Sobic006G050400 Sobic008G006100 Sobic008G006100 Sobic002G102200--Sobic008G006100 Sobic008G063200 Sobic008G063200 Sobic002G102200--Sobic008G063200 Sobic002G102200--Sobic009G059300 Sobic008G001900--Sobic005G001700 Sobic008G001900--Sobic001G073900 Sobic008G001900--Sobic004G235600 Sobic003G085100 Sobic003G085100 Sobic008G001900--Sobic003G085100 Sobic008G001900--Sobic003G332700 Sobic004G054400 Sobic004G054400 Sobic008G001900--Sobic004G054400 Sobic005G063000 Sobic005G063000 Sobic008G001900--Sobic005G063000 Sobic005G204200 Sobic005G204200 Sobic008G001900--Sobic005G204200 Sobic001G465700 Sobic001G465700 Sobic008G001900--Sobic001G465700 Sobic006G101500--Sobic003G387100 Sobic006G101500--Sobic002G102200 Sobic001G183000 Sobic001G183000 Sobic006G101500--Sobic001G183000 Sobic004G211600 Sobic004G211600 Sobic006G101500--Sobic004G211600 Sobic001G134700 Sobic001G134700 Sobic006G101500--Sobic001G134700 Sobic006G101500--Sobic003G431700 Sobic003G412900 Sobic003G412900 Sobic006G101500--Sobic003G412900 Sobic006G101500--Sobic006G093900 Sobic006G101500--Sobic008G006100 Sobic005G188600--Sobic001G065600 Sobic005G188600--Sobic001G158900 Sobic005G188600--Sobic006G188000 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic005G188600--Sobic006G101500 Sobic008G115900 Sobic008G115900 Sobic005G188600--Sobic008G115900 Sobic001G098301 Sobic001G098301 Sobic005G188600--Sobic001G098301 Sobic006G160400 Sobic006G160400 Sobic005G188600--Sobic006G160400 Sobic001G317400--Sobic002G036000 Sobic001G317400--Sobic001G391900 Sobic001G317400--Sobic003G443500 Sobic008G026800 Sobic008G026800 Sobic001G317400--Sobic008G026800 Sobic002G403600 Sobic002G403600 Sobic001G317400--Sobic002G403600 Sobic007G034300 Sobic007G034300 Sobic001G317400--Sobic007G034300 Sobic001G317400--Sobic001G158900 Sobic005G118300 Sobic005G118300 Sobic001G317400--Sobic005G118300 Sobic001G317400--Sobic008G053200
Octagon: transcription factors


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