Gene annotation
Transcriptome id Sobic.001G129000.1
Synonym Sb01g011310, cpHsc70-1
Functional annotation DnaK family protein, putative, expressed
UniProt A0A1B6QIR3
Pfam PF00012
Panther DB PTHR19375 PTHR19375:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49910 : chloroplast heat shock protein 70-2
RAP-DB (Rice) LOC_Os05g23740.1 : DnaK family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017075 , Zm00025a007684
Brachypodium KQJ91738 , KQK06850
Barley HORVU5Hr1G032650.7 , HORVU5Hr1G032650.6 , HORVU5Hr1G032650.5 , HORVU5Hr1G032650.4 , HORVU5Hr1G032650.3 , HORVU5Hr1G032650.2 , HORVU5Hr1G032650.1 , HORVU5Hr1G032650.9 , HORVU5Hr1G032650.8 , HORVU5Hr1G032650.10 , HORVU1Hr1G030790.4 , HORVU1Hr1G030790.5 , HORVU1Hr1G030790.1 , HORVU1Hr1G030790.2 , HORVU1Hr1G030790.3
Wheat TraesCS1D02G131800 , TraesCS1B02G151300 , TraesCS5A02G106200 , TraesCS5A02G106200 , TraesCS1A02G133100 , TraesCS1A02G133100 , TraesCS5B02G111200 , TraesCS5B02G111200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G129000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
2 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
3 Sobic.001G102800 expressed protein -
4 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
5 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
6 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
7 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
8 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
9 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -
10 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
11 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
12 Sobic.004G125700 isochorismatase family protein, putative, expressed -
13 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
14 Sobic.010G201700 GA16396-PA, putative, expressed -
15 Sobic.006G116050 - -
16 Sobic.008G188600 glyoxalase family protein, putative, expressed -
17 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
18 Sobic.009G140300 MLO domain containing protein, putative, expressed K08472: mlo protein
19 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
20 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)


Gene co-expression network
sample Sobic001G129000 Sobic001G129000 Sobic002G036000 Sobic002G036000 Sobic001G129000--Sobic002G036000 Sobic007G140800 Sobic007G140800 Sobic001G129000--Sobic007G140800 Sobic001G102800 Sobic001G102800 Sobic001G129000--Sobic001G102800 Sobic007G009200 Sobic007G009200 Sobic001G129000--Sobic007G009200 Sobic006G207800 Sobic006G207800 Sobic001G129000--Sobic006G207800 Sobic001G329400 Sobic001G329400 Sobic001G129000--Sobic001G329400 Sobic003G024300 Sobic003G024300 Sobic001G129000--Sobic003G024300 Sobic009G113800 Sobic009G113800 Sobic001G129000--Sobic009G113800 Sobic006G077400 Sobic006G077400 Sobic001G129000--Sobic006G077400 Sobic008G053200 Sobic008G053200 Sobic002G036000--Sobic008G053200 Sobic002G036000--Sobic001G102800 Sobic004G308700 Sobic004G308700 Sobic002G036000--Sobic004G308700 Sobic001G519800 Sobic001G519800 Sobic002G036000--Sobic001G519800 Sobic003G431700 Sobic003G431700 Sobic002G036000--Sobic003G431700 Sobic006G101500 Sobic006G101500 Sobic002G036000--Sobic006G101500 Sobic003G443500 Sobic003G443500 Sobic002G036000--Sobic003G443500 Sobic004G272100 Sobic004G272100 Sobic002G036000--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G036000--Sobic008G066100 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic010G201700 Sobic010G201700 Sobic007G140800--Sobic010G201700 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic007G140800--Sobic001G329400 Sobic007G140800--Sobic007G009200 Sobic004G125700 Sobic004G125700 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic003G002300 Sobic003G002300 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic009G043000 Sobic009G043000 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic001G102800--Sobic007G009200 Sobic007G052400 Sobic007G052400 Sobic001G102800--Sobic007G052400 Sobic001G102800--Sobic003G431700 Sobic007G009200--Sobic009G237100 Sobic007G009200--Sobic003G024300 Sobic007G009200--Sobic006G207800 Sobic003G398800 Sobic003G398800 Sobic007G009200--Sobic003G398800 Sobic006G238200 Sobic006G238200 Sobic007G009200--Sobic006G238200 Sobic007G009200--Sobic001G102800 Sobic007G009200--Sobic006G077400 Sobic007G009200--Sobic010G201700 Sobic010G035400 Sobic010G035400 Sobic007G009200--Sobic010G035400 Sobic006G207800--Sobic001G102800 Sobic006G207800--Sobic009G237100 Sobic006G207800--Sobic007G009200 Sobic003G387100 Sobic003G387100 Sobic006G207800--Sobic003G387100 Sobic006G207800--Sobic009G043000 Sobic006G207800--Sobic010G035400 Sobic006G207800--Sobic003G431700 Sobic006G207800--Sobic010G201700 Sobic006G207800--Sobic006G238200 Sobic001G329400--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic003G024300--Sobic007G009200 Sobic003G024300--Sobic006G077400 Sobic003G024300--Sobic001G329400 Sobic003G024300--Sobic001G491000 Sobic003G024300--Sobic009G104800 Sobic003G024300--Sobic003G398800 Sobic003G024300--Sobic004G125700 Sobic003G024300--Sobic007G161500 Sobic003G024300--Sobic010G201700 Sobic009G113800--Sobic006G207800 Sobic009G113800--Sobic007G140800 Sobic009G113800--Sobic001G102800 Sobic004G274100 Sobic004G274100 Sobic009G113800--Sobic004G274100 Sobic002G193800 Sobic002G193800 Sobic009G113800--Sobic002G193800 Sobic004G331700 Sobic004G331700 Sobic009G113800--Sobic004G331700 Sobic009G113800--Sobic003G303700 Sobic009G113800--Sobic009G237100 Sobic009G113800--Sobic007G009200 Sobic006G077400--Sobic003G024300 Sobic007G225500 Sobic007G225500 Sobic006G077400--Sobic007G225500 Sobic006G077400--Sobic007G009200 Sobic005G200200 Sobic005G200200 Sobic006G077400--Sobic005G200200 Sobic006G077400--Sobic007G140800 Sobic006G077400--Sobic001G491000 Sobic006G077400--Sobic010G201700 Sobic006G077400--Sobic010G035400 Sobic006G077400--Sobic006G238200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.