Gene annotation
Transcriptome id Sobic.010G023700.2,Sobic.010G023700.1
Synonym Sb10g002220
Functional annotation Transketolase (PubMedID : 26186930)
transketolase, chloroplast precursor, putative, expressed
UniProt A0A194YGV9
Pfam PF02780 PF02779 PF00456
Panther DB PTHR11624 PTHR11624:SF81
NCBI CDD -
KEGG Orthology K00615; E2.2.1.1, tktA, transketolase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G45290 : Transketolase
RAP-DB (Rice) LOC_Os06g04270.1 : transketolase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051761 , Zm00025a050138
Brachypodium KQJ82181 , KQK19985
Barley HORVU6Hr1G003210.49 , HORVU6Hr1G003210.48 , HORVU6Hr1G003210.45 , HORVU6Hr1G003210.44 , HORVU6Hr1G003210.47 , HORVU6Hr1G003210.46 , HORVU6Hr1G003210.41 , HORVU6Hr1G003210.40 , HORVU6Hr1G003210.43 , HORVU6Hr1G003210.42 , HORVU6Hr1G003210.8 , HORVU6Hr1G003210.9 , HORVU6Hr1G003210.4 , HORVU6Hr1G003210.5 , HORVU6Hr1G003210.6 , HORVU6Hr1G003210.7 , HORVU6Hr1G003210.1 , HORVU6Hr1G003210.2 , HORVU6Hr1G003210.3 , HORVU6Hr1G003210.52 , HORVU6Hr1G003210.53 , HORVU6Hr1G003210.50 , HORVU6Hr1G003210.51 , HORVU6Hr1G003210.56 , HORVU6Hr1G003210.54 , HORVU6Hr1G003210.55 , HORVU6Hr1G003210.27 , HORVU6Hr1G003210.26 , HORVU6Hr1G003210.25 , HORVU6Hr1G003210.24 , HORVU6Hr1G003210.23 , HORVU6Hr1G003210.22 , HORVU6Hr1G003210.21 , HORVU6Hr1G003210.20 , HORVU6Hr1G003210.29 , HORVU6Hr1G003210.28 , HORVU6Hr1G003210.34 , HORVU6Hr1G003210.35 , HORVU6Hr1G003210.36 , HORVU6Hr1G003210.37 , HORVU6Hr1G003210.30 , HORVU6Hr1G003210.31 , HORVU6Hr1G003210.32 , HORVU6Hr1G003210.33 , HORVU6Hr1G003210.38 , HORVU6Hr1G003210.39 , HORVU2Hr1G012790.1 , HORVU7Hr1G013600.3 , HORVU7Hr1G013600.2 , HORVU7Hr1G013600.1 , HORVU7Hr1G013600.6 , HORVU7Hr1G013600.5 , HORVU7Hr1G013600.4 , HORVU6Hr1G003210.18 , HORVU6Hr1G003210.19 , HORVU6Hr1G003210.16 , HORVU6Hr1G003210.17 , HORVU6Hr1G003210.14 , HORVU6Hr1G003210.15 , HORVU6Hr1G003210.12 , HORVU6Hr1G003210.13 , HORVU6Hr1G003210.10 , HORVU6Hr1G003210.11 , HORVU2Hr1G012790.3 , HORVU2Hr1G012790.2
Wheat TraesCS2B02G090100 , TraesCSU02G063400 , TraesCSU02G063400 , TraesCS2A02G075200 , TraesCS7A02G071100 , TraesCS7A02G071100 , TraesCS7D02G066500
Populus -


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cDNA sequences
Sobic.010G023700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
2 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
3 Sobic.001G129000 DnaK family protein, putative, expressed -
4 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
5 Sobic.004G125700 isochorismatase family protein, putative, expressed -
6 Sobic.001G102800 expressed protein -
7 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
8 Sobic.002G277100 -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
9 Sobic.001G020100 expressed protein -
10 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
11 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
12 Sobic.010G201700 GA16396-PA, putative, expressed -
13 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -
15 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
16 Sobic.009G125400 FZL, putative, expressed -
17 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
18 Sobic.007G225500 expressed protein -
19 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
20 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A


Gene co-expression network
sample Sobic010G023700 Sobic010G023700 Sobic002G051100 Sobic002G051100 Sobic010G023700--Sobic002G051100 Sobic009G063100 Sobic009G063100 Sobic010G023700--Sobic009G063100 Sobic001G129000 Sobic001G129000 Sobic010G023700--Sobic001G129000 Sobic004G272100 Sobic004G272100 Sobic010G023700--Sobic004G272100 Sobic004G125700 Sobic004G125700 Sobic010G023700--Sobic004G125700 Sobic001G102800 Sobic001G102800 Sobic010G023700--Sobic001G102800 Sobic007G140800 Sobic007G140800 Sobic010G023700--Sobic007G140800 Sobic002G277100 Sobic002G277100 Sobic010G023700--Sobic002G277100 Sobic001G020100 Sobic001G020100 Sobic010G023700--Sobic001G020100 Sobic003G002300 Sobic003G002300 Sobic002G051100--Sobic003G002300 Sobic001G519800 Sobic001G519800 Sobic002G051100--Sobic001G519800 Sobic002G051100--Sobic004G272100 Sobic008G102000 Sobic008G102000 Sobic002G051100--Sobic008G102000 Sobic001G489000 Sobic001G489000 Sobic002G051100--Sobic001G489000 Sobic009G140600 Sobic009G140600 Sobic002G051100--Sobic009G140600 Sobic010G201700 Sobic010G201700 Sobic002G051100--Sobic010G201700 Sobic003G387800 Sobic003G387800 Sobic002G051100--Sobic003G387800 Sobic007G004800 Sobic007G004800 Sobic002G051100--Sobic007G004800 Sobic009G063100--Sobic010G023700 Sobic009G063100--Sobic007G140800 Sobic009G063100--Sobic001G129000 Sobic010G188600 Sobic010G188600 Sobic009G063100--Sobic010G188600 Sobic004G274100 Sobic004G274100 Sobic009G063100--Sobic004G274100 Sobic006G207800 Sobic006G207800 Sobic009G063100--Sobic006G207800 Sobic007G029700 Sobic007G029700 Sobic009G063100--Sobic007G029700 Sobic009G063100--Sobic001G102800 Sobic009G237100 Sobic009G237100 Sobic009G063100--Sobic009G237100 Sobic002G036000 Sobic002G036000 Sobic001G129000--Sobic002G036000 Sobic001G129000--Sobic007G140800 Sobic001G129000--Sobic001G102800 Sobic007G009200 Sobic007G009200 Sobic001G129000--Sobic007G009200 Sobic001G129000--Sobic006G207800 Sobic001G329400 Sobic001G329400 Sobic001G129000--Sobic001G329400 Sobic003G024300 Sobic003G024300 Sobic001G129000--Sobic003G024300 Sobic009G113800 Sobic009G113800 Sobic001G129000--Sobic009G113800 Sobic006G077400 Sobic006G077400 Sobic001G129000--Sobic006G077400 Sobic004G308700 Sobic004G308700 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic004G272100--Sobic002G051100 Sobic004G272100--Sobic003G002300 Sobic004G272100--Sobic008G102000 Sobic009G043000 Sobic009G043000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100 Sobic009G104800 Sobic009G104800 Sobic004G125700--Sobic009G104800 Sobic004G125700--Sobic003G024300 Sobic004G125700--Sobic007G140800 Sobic004G125700--Sobic001G329400 Sobic004G125700--Sobic006G077400 Sobic004G125700--Sobic010G201700 Sobic003G431900 Sobic003G431900 Sobic004G125700--Sobic003G431900 Sobic006G244000 Sobic006G244000 Sobic004G125700--Sobic006G244000 Sobic004G125700--Sobic004G272100 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic001G102800--Sobic007G009200 Sobic007G052400 Sobic007G052400 Sobic001G102800--Sobic007G052400 Sobic003G431700 Sobic003G431700 Sobic001G102800--Sobic003G431700 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic007G140800--Sobic010G201700 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic007G140800--Sobic001G329400 Sobic007G140800--Sobic007G009200 Sobic007G140800--Sobic004G125700 Sobic007G140800--Sobic009G237100 Sobic009G183700 Sobic009G183700 Sobic002G277100--Sobic009G183700 Sobic010G005500 Sobic010G005500 Sobic002G277100--Sobic010G005500 Sobic010G277600 Sobic010G277600 Sobic002G277100--Sobic010G277600 Sobic002G277100--Sobic003G002300 Sobic002G277100--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic002G277100--Sobic007G225500 Sobic009G030900 Sobic009G030900 Sobic002G277100--Sobic009G030900 Sobic007G173800 Sobic007G173800 Sobic002G277100--Sobic007G173800 Sobic002G277100--Sobic009G043000 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G289500 Sobic001G289500 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000
Octagon: transcription factors


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