Gene annotation
| Transcriptome id | Sobic.002G277100.1 |
|---|---|
| Synonym | TIM, PDTPI, Sb02g031030 |
| Functional annotation | - (PubMedID : 29017446) triosephosphate isomerase, chloroplast precursor, putative, expressed |
| UniProt | C5X695 |
| Pfam | PF00121 |
| Panther DB | PTHR21139 PTHR21139:SF7 |
| NCBI CDD | KOG1643; Triosephosphate isomerase |
| KEGG Orthology | K01803; TPI, triosephosphate isomerase (TIM) |
| Gene Ontology | GO:0008152; metabolic process GO:0004807triose-phosphate isomerase activity |
Orthologs (automatic annotation)
| TAIR | AT2G21170 : triosephosphate isomerase |
|---|---|
| RAP-DB (Rice) | LOC_Os09g36450.1 : triosephosphate isomerase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a047811 , Zm00025a014450 |
| Brachypodium | KQJ91216 |
| Barley | HORVU5Hr1G082630.14 , HORVU5Hr1G082630.15 , HORVU5Hr1G082630.10 , HORVU5Hr1G082630.11 , HORVU5Hr1G082630.12 , HORVU5Hr1G082630.13 , HORVU5Hr1G082630.6 , HORVU5Hr1G082630.7 , HORVU5Hr1G082630.4 , HORVU5Hr1G082630.5 , HORVU5Hr1G082630.2 , HORVU5Hr1G082630.3 , HORVU5Hr1G082630.1 , HORVU5Hr1G082630.8 , HORVU5Hr1G082630.9 |
| Wheat | TraesCS5B02G324800 , TraesCS5B02G324800 , TraesCS5B02G324800 , TraesCS5D02G331100 , TraesCS5A02G324200 |
| Populus | PNT41648 , PNT41647 |
JBrowse
| Sobic.002G277100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G183700 | XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed | K00927: PGK, phosphoglycerate kinase |
| 2 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 3 | Sobic.010G277600 | - | - |
| 4 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 5 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 6 | Sobic.007G225500 | expressed protein | - |
| 7 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 8 | Sobic.007G173800 | uncharacterized protein ycf39, putative, expressed | - |
| 9 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 10 | Sobic.008G171300 | methyltransferase domain containing protein, putative, expressed | K12502: VTE3, MPBQ/MSBQ methyltransferase |
| 11 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 12 | Sobic.001G102800 | expressed protein | - |
| 13 | Sobic.004G331700 | aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed | K00811: aspartate aminotransferase, chloroplastic |
| 14 | Sobic.007G004600 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 15 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 16 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 17 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 18 | Sobic.004G012900 | expressed protein | - |
| 19 | Sobic.009G059300 | haloacid dehalogenase-like hydrolase family protein, putative, expressed | - |
| 20 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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